Difference between revisions of "RXN-8036"

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(Created page with "Category:reaction == Reaction DIAMINOPIMEPIM-RXN == * common-name: ** diaminopimelate epimerase * ec-number: ** [http://enzyme.expasy.org/EC/5.1.1.7 ec-5.1.1.7] * directio...")
(Created page with "Category:reaction == Reaction RXN-8991 == * common-name: ** 3-isopropylmalate dehydratase ** (2r,3s)-3-isopropylmalate hydro-lyase (2-isopropylmaleate-forming) * direction...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DIAMINOPIMEPIM-RXN ==
+
== Reaction RXN-8991 ==
 
* common-name:
 
* common-name:
−
** diaminopimelate epimerase
+
** 3-isopropylmalate dehydratase
−
* ec-number:
+
** (2r,3s)-3-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)
−
** [http://enzyme.expasy.org/EC/5.1.1.7 ec-5.1.1.7]
 
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 +
* synonymous:
 +
** α-isopropylmalate isomerase
 +
** (2r,3s)-3-isopropylmalate hydro-lyase
 +
** β-isopropylmalate dehydratase
 +
** 3-isopropylmalate hydro-lyase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[LL-DIAMINOPIMELATE]][c] '''<=>''' 1 [[MESO-DIAMINOPIMELATE]][c]
+
* 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''<=>''' 1 [[CPD-9451]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_22451]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[E_subulatus_16031]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_16033]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_03963]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_21072]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_16032]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_21073]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_16030]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* [[LEUSYN-PWY]], L-leucine biosynthesis:
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered):
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* DB : LIGAND-RXN
+
* METANETX-RXN : MNXR100827
−
* ID : R02735
+
* RHEA:
−
{{#set: common-name=diaminopimelate epimerase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10676 10676]
−
{{#set: ec-number=ec-5.1.1.7}}
+
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04001 R04001]
 +
{{#set: common-name=3-isopropylmalate dehydratase|(2r,3s)-3-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)}}
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: nb gene associated=1}}
+
{{#set: synonymous=&alpha;-isopropylmalate isomerase|(2r,3s)-3-isopropylmalate hydro-lyase|&beta;-isopropylmalate dehydratase|3-isopropylmalate hydro-lyase}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb gene associated=7}}
 +
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
 
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Revision as of 15:19, 15 March 2021

Reaction RXN-8991

  • common-name:
    • 3-isopropylmalate dehydratase
    • (2r,3s)-3-isopropylmalate hydro-lyase (2-isopropylmaleate-forming)
  • direction:
    • reversible
  • synonymous:
    • α-isopropylmalate isomerase
    • (2r,3s)-3-isopropylmalate hydro-lyase
    • β-isopropylmalate dehydratase
    • 3-isopropylmalate hydro-lyase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • LEUSYN-PWY, L-leucine biosynthesis:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6871, 3-methylbutanol biosynthesis (engineered):
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR100827
  • RHEA:
  • LIGAND-RXN:





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