Difference between revisions of "RXN-10782"

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(Created page with "Category:reaction == Reaction ASPARAGINE--TRNA-LIGASE-RXN == * common-name: ** asparagine-trna ligase ** asparagine—trna ligase * ec-number: ** [http://enzyme.expasy...")
(Created page with "Category:reaction == Reaction RIBOFLAVINKIN-RXN == * common-name: ** riboflavin kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.26 ec-2.7.1.26] * direction: ** l...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ASPARAGINE--TRNA-LIGASE-RXN ==
+
== Reaction RIBOFLAVINKIN-RXN ==
 
* common-name:
 
* common-name:
−
** asparagine-trna ligase
+
** riboflavin kinase
−
** asparagine—trna ligase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.22 ec-6.1.1.22]
+
** [http://enzyme.expasy.org/EC/2.7.1.26 ec-2.7.1.26]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ASN]][c] '''+''' 1 [[ASN-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ASN-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[RIBOFLAVIN]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[FMN]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_00557]]
+
* Gene: [[E_subulatus_07409]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_00555]]
+
* Gene: [[E_subulatus_15521]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_12590]]
+
* Gene: [[E_subulatus_07408]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_20567]]
+
* Gene: [[E_subulatus_15520]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_00556]]
+
* Gene: [[E_subulatus_12139]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[E_subulatus_12591]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
* [[PWY-6168]], flavin biosynthesis III (fungi):
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5523]], 5,6-dimethylbenzimidazole biosynthesis I (aerobic):
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7863]], roseoflavin biosynthesis:
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY66-366]], flavin salvage:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* DB : RHEA
+
* METANETX-RXN : MNXR103429
−
* ID : 11180
+
* RHEA:
−
{{#set: common-name=asparagine-trna ligase|asparagine—trna ligase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14358 14358]
−
{{#set: ec-number=ec-6.1.1.22}}
+
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00549 R00549]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9JVY5 Q9JVY5]
 +
** [http://www.uniprot.org/uniprot/Q9PHS7 Q9PHS7]
 +
** [http://www.uniprot.org/uniprot/Q59263 Q59263]
 +
{{#set: common-name=riboflavin kinase}}
 +
{{#set: ec-number=ec-2.7.1.26}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=5}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Revision as of 15:21, 15 March 2021

Reaction RIBOFLAVINKIN-RXN

  • common-name:
    • riboflavin kinase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6168, flavin biosynthesis III (fungi):
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-5523, 5,6-dimethylbenzimidazole biosynthesis I (aerobic):
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7863, roseoflavin biosynthesis:
    • 1 reactions found over 7 reactions in the full pathway
  • PWY66-366, flavin salvage:
    • 2 reactions found over 2 reactions in the full pathway
  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants):
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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