Difference between revisions of "RXN0-722"

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(Created page with "Category:reaction == Reaction RXN-11026 == * common-name: ** acyl-coa oxidase * ec-number: ** [http://enzyme.expasy.org/EC/1.3.3.6 ec-1.3.3.6] * direction: ** left-to-righ...")
(Created page with "Category:reaction == Reaction ASNSYNB-RXN == * common-name: ** l-aspartate:l-glutamine amido-ligase (amp-forming) ** asparagine synthase (glutamine-hydrolyzing) * ec-numbe...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-11026 ==
+
== Reaction ASNSYNB-RXN ==
 
* common-name:
 
* common-name:
−
** acyl-coa oxidase
+
** l-aspartate:l-glutamine amido-ligase (amp-forming)
 +
** asparagine synthase (glutamine-hydrolyzing)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.3.6 ec-1.3.3.6]
+
** [http://enzyme.expasy.org/EC/6.3.5.4 ec-6.3.5.4]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[TRANS-D2-ENOYL-COA]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[L-ASPARTATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[ASN]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_07245]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[E_subulatus_00580]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_15542]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_07244]]
+
* Gene: [[E_subulatus_09531]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_07246]]
+
* Gene: [[E_subulatus_09532]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_11079]]
+
* Gene: [[E_subulatus_00581]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_15541]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7007]], methyl ketone biosynthesis (engineered):
+
* [[ASPARAGINE-BIOSYNTHESIS]], L-asparagine biosynthesis I:
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-7288]], fatty acid &beta;-oxidation VII (yeast peroxisome):
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5136]], fatty acid &beta;-oxidation II (plant peroxisome):
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY66-391]], fatty acid &beta;-oxidation VI (mammalian peroxisome):
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* METANETX-RXN : MNXR116657
+
* METANETX-RXN : MNXR96059
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=38960 38960]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12229 12229]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00578 R00578]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O65202 O65202]
+
** [http://www.uniprot.org/uniprot/P22106 P22106]
−
** [http://www.uniprot.org/uniprot/O65201 O65201]
+
** [http://www.uniprot.org/uniprot/P08243 P08243]
−
** [http://www.uniprot.org/uniprot/O23977 O23977]
+
** [http://www.uniprot.org/uniprot/P19891 P19891]
−
** [http://www.uniprot.org/uniprot/P13711 P13711]
+
** [http://www.uniprot.org/uniprot/P17714 P17714]
−
** [http://www.uniprot.org/uniprot/P34355 P34355]
+
** [http://www.uniprot.org/uniprot/P19251 P19251]
−
** [http://www.uniprot.org/uniprot/P07872 P07872]
+
** [http://www.uniprot.org/uniprot/P19252 P19252]
−
** [http://www.uniprot.org/uniprot/P11356 P11356]
+
** [http://www.uniprot.org/uniprot/Q58516 Q58516]
−
** [http://www.uniprot.org/uniprot/P06598 P06598]
+
** [http://www.uniprot.org/uniprot/Q9CDJ2 Q9CDJ2]
−
** [http://www.uniprot.org/uniprot/Q00468 Q00468]
+
** [http://www.uniprot.org/uniprot/Q9UZJ0 Q9UZJ0]
−
** [http://www.uniprot.org/uniprot/Q15067 Q15067]
+
** [http://www.uniprot.org/uniprot/O58829 O58829]
−
* LIGAND-RXN:
+
** [http://www.uniprot.org/uniprot/Q9UZL3 Q9UZL3]
−
** [http://www.genome.jp/dbget-bin/www_bget?R00388 R00388]
+
** [http://www.uniprot.org/uniprot/O26514 O26514]
−
* PIR:
+
** [http://www.uniprot.org/uniprot/Q42792 Q42792]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A54942 A54942]
+
** [http://www.uniprot.org/uniprot/P31752 P31752]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B54942 B54942]
+
** [http://www.uniprot.org/uniprot/P49091 P49091]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I38095 I38095]
+
** [http://www.uniprot.org/uniprot/P49089 P49089]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4563 JC4563]
+
** [http://www.uniprot.org/uniprot/P49088 P49088]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKAX OXCKAX]
+
** [http://www.uniprot.org/uniprot/P49090 P49090]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKP2 OXCKP2]
+
** [http://www.uniprot.org/uniprot/P49092 P49092]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKPM OXCKPM]
+
** [http://www.uniprot.org/uniprot/P49093 P49093]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX OXCKX]
+
** [http://www.uniprot.org/uniprot/P49094 P49094]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX4 OXCKX4]
+
** [http://www.uniprot.org/uniprot/Q43011 Q43011]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXCKX5 OXCKX5]
+
** [http://www.uniprot.org/uniprot/P93167 P93167]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXRTA1 OXRTA1]
+
** [http://www.uniprot.org/uniprot/O49076 O49076]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=OXRTA2 OXRTA2]
+
** [http://www.uniprot.org/uniprot/P49078 P49078]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40722 S40722]
+
** [http://www.uniprot.org/uniprot/Q21463 Q21463]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S64224 S64224]
+
** [http://www.uniprot.org/uniprot/O77330 O77330]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04418 T04418]
+
** [http://www.uniprot.org/uniprot/P78753 P78753]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52120 T52120]
+
** [http://www.uniprot.org/uniprot/Q9LFU1 Q9LFU1]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52121 T52121]
+
** [http://www.uniprot.org/uniprot/Q9ZST7 Q9ZST7]
 
</div>
 
</div>
−
{{#set: common-name=acyl-coa oxidase}}
+
{{#set: common-name=asparagine synthase (glutamine-hydrolyzing)|l-aspartate:l-glutamine amido-ligase (amp-forming)}}
−
{{#set: ec-number=ec-1.3.3.6}}
+
{{#set: ec-number=ec-6.3.5.4}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=6}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Revision as of 19:04, 17 March 2021

Reaction ASNSYNB-RXN

  • common-name:
    • l-aspartate:l-glutamine amido-ligase (amp-forming)
    • asparagine synthase (glutamine-hydrolyzing)
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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