Difference between revisions of "TRANS-RXN0-623"

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(Created page with "Category:reaction == Reaction 3.1.4.17-RXN == * common-name: ** 3',5'-cyclic-nucleotide phosphodiesterase * ec-number: ** [http://enzyme.expasy.org/EC/3.1.4.17 ec-3.1.4.17...")
(Created page with "Category:reaction == Reaction RXN-14228 == * common-name: ** nucleoside diphosphate kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6] * direction: **...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.1.4.17-RXN ==
+
== Reaction RXN-14228 ==
 
* common-name:
 
* common-name:
−
** 3',5'-cyclic-nucleotide phosphodiesterase
+
** nucleoside diphosphate kinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.4.17 ec-3.1.4.17]
+
** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Cyclic-3-5-Nucleoside-Monophosphates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Nucleoside-Monophosphates]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CPD0-2231]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[DITP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[E_subulatus_21787]]
+
* Gene: [[E_subulatus_19894]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_03563]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_07900]]
+
* Gene: [[E_subulatus_11361]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_15295]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_17016]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_17018]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_11038]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_13577]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_03750]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_19893]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_13578]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_11674]]
+
* Gene: [[E_subulatus_03752]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_23995]]
+
* Gene: [[E_subulatus_11039]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_11363]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_21788]]
+
* Gene: [[E_subulatus_11037]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_06472]]
+
* Gene: [[E_subulatus_03631]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_21786]]
+
* Gene: [[E_subulatus_24493]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_17015]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_21791]]
+
* Gene: [[E_subulatus_23205]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_07899]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_13579]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_23994]]
+
* Gene: [[E_subulatus_03751]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_11673]]
+
* Gene: [[E_subulatus_03562]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_25805]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_17017]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_19892]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_11362]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_13580]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 47: Line 101:
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR101934
−
* METANETX-RXN : MNXR115300
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14654 14654]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30942 30942]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03259 R03259]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03530 R03530]
−
* UNIPROT:
+
{{#set: common-name=nucleoside diphosphate kinase}}
−
** [http://www.uniprot.org/uniprot/P12019 P12019]
+
{{#set: ec-number=ec-2.7.4.6}}
−
** [http://www.uniprot.org/uniprot/Q56686 Q56686]
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/P14099 P14099]
+
{{#set: nb gene associated=27}}
−
** [http://www.uniprot.org/uniprot/Q01066 Q01066]
 
−
** [http://www.uniprot.org/uniprot/Q01061 Q01061]
 
−
** [http://www.uniprot.org/uniprot/P14100 P14100]
 
−
** [http://www.uniprot.org/uniprot/Q01065 Q01065]
 
−
** [http://www.uniprot.org/uniprot/P27815 P27815]
 
−
** [http://www.uniprot.org/uniprot/O66909 O66909]
 
−
** [http://www.uniprot.org/uniprot/P14270 P14270]
 
−
** [http://www.uniprot.org/uniprot/O27755 O27755]
 
−
** [http://www.uniprot.org/uniprot/P44685 P44685]
 
−
** [http://www.uniprot.org/uniprot/P22434 P22434]
 
−
** [http://www.uniprot.org/uniprot/P0AEW4 P0AEW4]
 
−
** [http://www.uniprot.org/uniprot/O26280 O26280]
 
−
** [http://www.uniprot.org/uniprot/O06629 O06629]
 
−
** [http://www.uniprot.org/uniprot/O30241 O30241]
 
−
** [http://www.uniprot.org/uniprot/P14644 P14644]
 
−
** [http://www.uniprot.org/uniprot/P54748 P54748]
 
−
** [http://www.uniprot.org/uniprot/Q13945 Q13945]
 
−
** [http://www.uniprot.org/uniprot/Q01062 Q01062]
 
−
** [http://www.uniprot.org/uniprot/P54827 P54827]
 
−
** [http://www.uniprot.org/uniprot/Q01064 Q01064]
 
−
** [http://www.uniprot.org/uniprot/Q9NP56 Q9NP56]
 
−
** [http://www.uniprot.org/uniprot/O60658 O60658]
 
−
** [http://www.uniprot.org/uniprot/P36599 P36599]
 
−
** [http://www.uniprot.org/uniprot/P30645 P30645]
 
−
** [http://www.uniprot.org/uniprot/Q45859 Q45859]
 
−
** [http://www.uniprot.org/uniprot/P12252 P12252]
 
−
** [http://www.uniprot.org/uniprot/P06776 P06776]
 
−
** [http://www.uniprot.org/uniprot/Q08493 Q08493]
 
−
** [http://www.uniprot.org/uniprot/Q63421 Q63421]
 
−
</div>
 
−
{{#set: common-name=3',5'-cyclic-nucleotide phosphodiesterase}}
 
−
{{#set: ec-number=ec-3.1.4.17}}
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: nb gene associated=11}}
 
 
{{#set: nb pathway associated=0}}
 
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Revision as of 19:05, 17 March 2021

Reaction RXN-14228

  • common-name:
    • nucleoside diphosphate kinase
  • ec-number:
  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR101934
  • RHEA:
  • LIGAND-RXN:





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