Difference between revisions of "RXN-15128"

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(Created page with "Category:reaction == Reaction SERINE--TRNA-LIGASE-RXN == * common-name: ** serine-trna ligase ** l-serine:trnaser ligase (amp-forming) * ec-number: ** [http://enzyme.expas...")
(Created page with "Category:reaction == Reaction RXN0-5260 == * common_name: ** sn-glycerol 3-phosphate:ubiquinone oxidoreductase * direction: ** left-to-right * ec_number: ** ec-1.1.5.3 ==...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SERINE--TRNA-LIGASE-RXN ==
+
== Reaction RXN0-5260 ==
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* common-name:
+
* common_name:
−
** serine-trna ligase
+
** sn-glycerol 3-phosphate:ubiquinone oxidoreductase
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** l-serine:trnaser ligase (amp-forming)
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/6.1.1.11 ec-6.1.1.11]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* ec_number:
 +
** ec-1.1.5.3
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[SER-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-SER-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[GLYCEROL-3P]][c] '''+''' 1 [[Ubiquinones]][c] '''=>''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1 [[Ubiquinols]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[E_subulatus_18289]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[E_subulatus_18290]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[E_subulatus_17805]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[TRNA-CHARGING-PWY]], tRNA charging:
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* [[PWY0-1561]], glycerol-3-phosphate to cytochrome bo oxidase electron transfer:
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** '''21''' reactions found over '''21''' reactions in the full pathway
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** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6952]], glycerophosphodiester degradation:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY0-1584]], nitrate reduction X (dissimilatory, periplasmic):
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-4261]], glycerol degradation I:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6118]], glycerol-3-phosphate shuttle:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
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* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[esub_adding_annot_form]]; tool: [[curation]]; comment: annotation
 
== External links  ==
 
== External links  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* METANETX-RXN : MNXR123236
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* METANETX-RXN : MNXR123879
 
 
* RHEA:
 
* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12293 12293]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28756 28756]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R03662 R03662]
+
** [http://www.genome.jp/dbget-bin/www_bget?R08657 R08657]
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* UNIPROT:
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{{#set: common_name=sn-glycerol 3-phosphate:ubiquinone oxidoreductase}}
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** [http://www.uniprot.org/uniprot/Q9ZCG5 Q9ZCG5]
 
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** [http://www.uniprot.org/uniprot/O51244 O51244]
 
−
** [http://www.uniprot.org/uniprot/O66647 O66647]
 
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** [http://www.uniprot.org/uniprot/Q9PIB3 Q9PIB3]
 
−
** [http://www.uniprot.org/uniprot/Q58477 Q58477]
 
−
** [http://www.uniprot.org/uniprot/O27194 O27194]
 
−
** [http://www.uniprot.org/uniprot/O84734 O84734]
 
−
** [http://www.uniprot.org/uniprot/Q9X199 Q9X199]
 
−
** [http://www.uniprot.org/uniprot/P47251 P47251]
 
−
** [http://www.uniprot.org/uniprot/Q9JT77 Q9JT77]
 
−
** [http://www.uniprot.org/uniprot/O83653 O83653]
 
−
** [http://www.uniprot.org/uniprot/Q9Z736 Q9Z736]
 
−
** [http://www.uniprot.org/uniprot/P49591 P49591]
 
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** [http://www.uniprot.org/uniprot/P56458 P56458]
 
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** [http://www.uniprot.org/uniprot/Q9ZJD9 Q9ZJD9]
 
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** [http://www.uniprot.org/uniprot/Q9CEX2 Q9CEX2]
 
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** [http://www.uniprot.org/uniprot/P43833 P43833]
 
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** [http://www.uniprot.org/uniprot/P26636 P26636]
 
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** [http://www.uniprot.org/uniprot/P39919 P39919]
 
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** [http://www.uniprot.org/uniprot/P37464 P37464]
 
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** [http://www.uniprot.org/uniprot/Q39230 Q39230]
 
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** [http://www.uniprot.org/uniprot/P75107 P75107]
 
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** [http://www.uniprot.org/uniprot/P73201 P73201]
 
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** [http://www.uniprot.org/uniprot/O82108 O82108]
 
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** [http://www.uniprot.org/uniprot/O82110 O82110]
 
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** [http://www.uniprot.org/uniprot/O81983 O81983]
 
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** [http://www.uniprot.org/uniprot/O45887 O45887]
 
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** [http://www.uniprot.org/uniprot/O14018 O14018]
 
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** [http://www.uniprot.org/uniprot/P54221 P54221]
 
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** [http://www.uniprot.org/uniprot/P07284 P07284]
 
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** [http://www.uniprot.org/uniprot/P0A8L1 P0A8L1]
 
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</div>
 
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{{#set: common-name=serine-trna ligase|l-serine:trnaser ligase (amp-forming)}}
 
−
{{#set: ec-number=ec-6.1.1.11}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=3}}
+
{{#set: ec_number=ec-1.1.5.3}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb gene associated=0}}
−
{{#set: reconstruction category=annotation}}
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{{#set: nb pathway associated=5}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction category=manual}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction comment=annotation}}
 +
{{#set: reconstruction source=esub_adding_annot_form}}

Revision as of 19:05, 17 March 2021

Reaction RXN0-5260

  • common_name:
    • sn-glycerol 3-phosphate:ubiquinone oxidoreductase
  • direction:
    • left-to-right
  • ec_number:
    • ec-1.1.5.3

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1561, glycerol-3-phosphate to cytochrome bo oxidase electron transfer:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6952, glycerophosphodiester degradation:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY0-1584, nitrate reduction X (dissimilatory, periplasmic):
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-4261, glycerol degradation I:
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6118, glycerol-3-phosphate shuttle:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR123236
  • RHEA:
  • LIGAND-RXN:





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