Difference between revisions of "TransportSeed-FERRICYTOCHROME-B5"

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(Created page with "Category:reaction == Reaction POLYNUCLEOTIDE-ADENYLYLTRANSFERASE-RXN == * common-name: ** poly(a) polymerase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.7.19 ec-2.7.7...")
(Created page with "Category:reaction == Reaction ACYLCOADEHYDROG-RXN == * common-name: ** acyl-coa dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.3.8 ec-1.3.8] * direction: **...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction POLYNUCLEOTIDE-ADENYLYLTRANSFERASE-RXN ==
+
== Reaction ACYLCOADEHYDROG-RXN ==
 
* common-name:
 
* common-name:
−
** poly(a) polymerase
+
** acyl-coa dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.7.19 ec-2.7.7.19]
+
** [http://enzyme.expasy.org/EC/1.3.8 ec-1.3.8]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* synonymous:
 +
** fatty-acyl-coa dehydrogenase
 +
** long-chain acyl coenzyme a dehydrogenase
 +
** medium-chain acyl-coenzyme a dehydrogenase
 +
** fatty acyl coenzyme a dehydrogenase
 +
** general acyl coa dehydrogenase
 +
** acyl coenzyme a dehydrogenase
 +
** long-chain acyl-coa dehydrogenase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[RNA-Holder]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[RNA-Holder]][c]
+
* 1 [[ETF-Oxidized]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c] '''=>''' 1 [[ETF-Reduced]][c] '''+''' 1 [[TRANS-D2-ENOYL-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[E_subulatus_03969]]
+
* Gene: [[E_subulatus_25108]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_13888]]
+
* Gene: [[E_subulatus_25109]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_23650]]
+
* Gene: [[E_subulatus_12413]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_11511]]
+
* Gene: [[E_subulatus_17420]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_03970]]
+
* Gene: [[E_subulatus_25110]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_11510]]
+
* Gene: [[E_subulatus_21544]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_11509]]
+
* Gene: [[E_subulatus_23466]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_03971]]
+
* Gene: [[E_subulatus_11080]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_13889]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_21074]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_11508]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[FAO-PWY]], fatty acid &beta;-oxidation I (generic):
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR116143
+
* METANETX-RXN : MNXR115669
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=44705 44705]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P44439 P44439]
+
** [http://www.uniprot.org/uniprot/P16219 P16219]
−
** [http://www.uniprot.org/uniprot/Q9I5A6 Q9I5A6]
+
** [http://www.uniprot.org/uniprot/P45952 P45952]
−
** [http://www.uniprot.org/uniprot/Q9I657 Q9I657]
+
** [http://www.uniprot.org/uniprot/P15651 P15651]
−
** [http://www.uniprot.org/uniprot/Q9JV08 Q9JV08]
+
** [http://www.uniprot.org/uniprot/P11310 P11310]
−
** [http://www.uniprot.org/uniprot/Q9KVV5 Q9KVV5]
+
** [http://www.uniprot.org/uniprot/P08503 P08503]
−
** [http://www.uniprot.org/uniprot/P0ABF1 P0ABF1]
+
** [http://www.uniprot.org/uniprot/Q07417 Q07417]
−
** [http://www.uniprot.org/uniprot/Q9CFC2 Q9CFC2]
+
** [http://www.uniprot.org/uniprot/Q54857 Q54857]
−
** [http://www.uniprot.org/uniprot/P07617 P07617]
+
** [http://www.uniprot.org/uniprot/P45867 P45867]
−
** [http://www.uniprot.org/uniprot/P32129 P32129]
+
** [http://www.uniprot.org/uniprot/Q9X3R3 Q9X3R3]
−
** [http://www.uniprot.org/uniprot/Q98199 Q98199]
+
** [http://www.uniprot.org/uniprot/Q9R9I6 Q9R9I6]
−
** [http://www.uniprot.org/uniprot/Q98244 Q98244]
+
** [http://www.uniprot.org/uniprot/Q96329 Q96329]
−
{{#set: common-name=poly(a) polymerase}}
+
{{#set: common-name=acyl-coa dehydrogenase}}
−
{{#set: ec-number=ec-2.7.7.19}}
+
{{#set: ec-number=ec-1.3.8}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=11}}
+
{{#set: synonymous=fatty acyl coenzyme a dehydrogenase|long-chain acyl coenzyme a dehydrogenase|medium-chain acyl-coenzyme a dehydrogenase|long-chain acyl-coa dehydrogenase|general acyl coa dehydrogenase|fatty-acyl-coa dehydrogenase|acyl coenzyme a dehydrogenase}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb gene associated=8}}
 +
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Revision as of 19:05, 17 March 2021

Reaction ACYLCOADEHYDROG-RXN

  • common-name:
    • acyl-coa dehydrogenase
  • ec-number:
  • direction:
    • left-to-right
  • synonymous:
    • fatty-acyl-coa dehydrogenase
    • long-chain acyl coenzyme a dehydrogenase
    • medium-chain acyl-coenzyme a dehydrogenase
    • fatty acyl coenzyme a dehydrogenase
    • general acyl coa dehydrogenase
    • acyl coenzyme a dehydrogenase
    • long-chain acyl-coa dehydrogenase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • FAO-PWY, fatty acid β-oxidation I (generic):
    • 5 reactions found over 7 reactions in the full pathway

Reconstruction information

External links






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