Difference between revisions of "RXN-7253"

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(Created page with "Category:reaction == Reaction PROLINE--TRNA-LIGASE-RXN == * common-name: ** proline—trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/6.1.1.15 ec-6.1.1.15] *...")
(Created page with "Category:reaction == Reaction RXN-3142 == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.170 ec-2.3.1.170] * direction: ** left-to-right == Reaction formula == * 3 M...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction PROLINE--TRNA-LIGASE-RXN ==
+
== Reaction RXN-3142 ==
* common-name:
 
** proline—trna ligase
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/6.1.1.15 ec-6.1.1.15]
+
** [http://enzyme.expasy.org/EC/2.3.1.170 ec-2.3.1.170]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[ATP]][c] '''+''' 1 [[PRO]][c] '''+''' 1 [[PRO-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-PRO-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 3 [[MALONYL-COA]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[P-COUMAROYL-COA]][c] '''+''' 4 [[PROTON]][c] '''=>''' 3 [[CARBON-DIOXIDE]][c] '''+''' 4 [[CO-A]][c] '''+''' 1 [[CPD-3041]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[E_subulatus_12906]]
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* Gene: [[E_subulatus_17252]]
** Category: [[annotation]]
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** Category: [[orthology]]
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
* Gene: [[E_subulatus_12908]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_12907]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis:
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR110355
* METANETX-RXN : MNXR116156
+
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R06568 R06568]
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14306 14306]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10584 10584]
* LIGAND-RXN:
+
{{#set: ec-number=ec-2.3.1.170}}
** [http://www.genome.jp/dbget-bin/www_bget?R03661 R03661]
 
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/O51363 O51363]
 
** [http://www.uniprot.org/uniprot/O58734 O58734]
 
** [http://www.uniprot.org/uniprot/Q9ZMJ6 Q9ZMJ6]
 
** [http://www.uniprot.org/uniprot/P43830 P43830]
 
** [http://www.uniprot.org/uniprot/P47525 P47525]
 
** [http://www.uniprot.org/uniprot/O26708 O26708]
 
** [http://www.uniprot.org/uniprot/Q9JU09 Q9JU09]
 
** [http://www.uniprot.org/uniprot/Q58635 Q58635]
 
** [http://www.uniprot.org/uniprot/P56124 P56124]
 
** [http://www.uniprot.org/uniprot/O83195 O83195]
 
** [http://www.uniprot.org/uniprot/Q9Z851 Q9Z851]
 
** [http://www.uniprot.org/uniprot/O31755 O31755]
 
** [http://www.uniprot.org/uniprot/P36431 P36431]
 
** [http://www.uniprot.org/uniprot/Q9ZDE7 Q9ZDE7]
 
** [http://www.uniprot.org/uniprot/Q9PHX1 Q9PHX1]
 
** [http://www.uniprot.org/uniprot/Q9CDT4 Q9CDT4]
 
** [http://www.uniprot.org/uniprot/Q9WYY4 Q9WYY4]
 
** [http://www.uniprot.org/uniprot/P75382 P75382]
 
** [http://www.uniprot.org/uniprot/Q49090 Q49090]
 
** [http://www.uniprot.org/uniprot/P07814 P07814]
 
** [http://www.uniprot.org/uniprot/P16659 P16659]
 
</div>
 
{{#set: common-name=proline&mdash;trna ligase}}
 
{{#set: ec-number=ec-6.1.1.15}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem}}

Revision as of 19:05, 17 March 2021

Reaction RXN-3142

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY1F-FLAVSYN, flavonoid biosynthesis:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR110355
  • LIGAND-RXN:
  • RHEA: