Difference between revisions of "CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN"

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(Created page with "Category:reaction == Reaction VALINE--TRNA-LIGASE-RXN == * common-name: ** valine-trna ligase ** valine—trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/6.1....")
(Created page with "Category:reaction == Reaction DLACTDEHYDROGNAD-RXN == * common-name: ** d-lactate dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.28 ec-1.1.1.28] * direct...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction VALINE--TRNA-LIGASE-RXN ==
+
== Reaction DLACTDEHYDROGNAD-RXN ==
 
* common-name:
 
* common-name:
−
** valine-trna ligase
+
** d-lactate dehydrogenase
−
** valine—trna ligase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.9 ec-6.1.1.9]
+
** [http://enzyme.expasy.org/EC/1.1.1.28 ec-1.1.1.28]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[VAL]][c] '''+''' 1 [[VAL-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-VAL-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[D-LACTATE]][c] '''+''' 1 [[NAD]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[E_subulatus_03798]]
−
* Gene: [[E_subulatus_16722]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_16720]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_16724]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_16721]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_16723]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_22977]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_22978]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_16725]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_10900]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_22979]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[FERMENTATION-PWY]], mixed acid fermentation:
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''10''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii):
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6454]], vancomycin resistance I:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[P122-PWY]], heterolactic fermentation:
 +
** '''14''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-6901]], superpathway of glucose and xylose degradation:
 +
** '''9''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR101037
−
* METANETX-RXN : MNXR124096
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10705 10705]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16371 16371]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03665 R03665]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00704 R00704]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P28350 P28350]
+
** [http://www.uniprot.org/uniprot/P26297 P26297]
−
** [http://www.uniprot.org/uniprot/P36420 P36420]
+
** [http://www.uniprot.org/uniprot/P26298 P26298]
−
** [http://www.uniprot.org/uniprot/P56000 P56000]
+
** [http://www.uniprot.org/uniprot/Q7M4J0 Q7M4J0]
−
** [http://www.uniprot.org/uniprot/O51680 O51680]
+
** [http://www.uniprot.org/uniprot/Q9R553 Q9R553]
−
** [http://www.uniprot.org/uniprot/O67411 O67411]
+
** [http://www.uniprot.org/uniprot/P06149 P06149]
−
** [http://www.uniprot.org/uniprot/O83998 O83998]
+
** [http://www.uniprot.org/uniprot/Q9JT76 Q9JT76]
−
** [http://www.uniprot.org/uniprot/Q9ZCN6 Q9ZCN6]
+
** [http://www.uniprot.org/uniprot/Q9JUP8 Q9JUP8]
−
** [http://www.uniprot.org/uniprot/Q9Z987 Q9Z987]
+
** [http://www.uniprot.org/uniprot/P52643 P52643]
−
** [http://www.uniprot.org/uniprot/Q9X2D7 Q9X2D7]
+
** [http://www.uniprot.org/uniprot/P45295 P45295]
−
** [http://www.uniprot.org/uniprot/Q9ZK61 Q9ZK61]
+
** [http://www.uniprot.org/uniprot/P30901 P30901]
−
** [http://www.uniprot.org/uniprot/Q9CDP6 Q9CDP6]
+
** [http://www.uniprot.org/uniprot/Q89388 Q89388]
−
** [http://www.uniprot.org/uniprot/Q58413 Q58413]
+
{{#set: common-name=d-lactate dehydrogenase}}
−
** [http://www.uniprot.org/uniprot/P43834 P43834]
+
{{#set: ec-number=ec-1.1.1.28}}
−
** [http://www.uniprot.org/uniprot/Q9PPE4 Q9PPE4]
 
−
** [http://www.uniprot.org/uniprot/O84304 O84304]
 
−
** [http://www.uniprot.org/uniprot/P47576 P47576]
 
−
** [http://www.uniprot.org/uniprot/Q94678 Q94678]
 
−
** [http://www.uniprot.org/uniprot/Q04462 Q04462]
 
−
** [http://www.uniprot.org/uniprot/P26640 P26640]
 
−
** [http://www.uniprot.org/uniprot/Q05873 Q05873]
 
−
** [http://www.uniprot.org/uniprot/Q26177 Q26177]
 
−
** [http://www.uniprot.org/uniprot/P75304 P75304]
 
−
** [http://www.uniprot.org/uniprot/Q49021 Q49021]
 
−
** [http://www.uniprot.org/uniprot/P11931 P11931]
 
−
** [http://www.uniprot.org/uniprot/P07806 P07806]
 
−
** [http://www.uniprot.org/uniprot/P07118 P07118]
 
−
** [http://www.uniprot.org/uniprot/O77443 O77443]
 
−
</div>
 
−
{{#set: common-name=valine-trna ligase|valine&mdash;trna ligase}}
 
−
{{#set: ec-number=ec-6.1.1.9}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=10}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=6}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Revision as of 19:06, 17 March 2021

Reaction DLACTDEHYDROGNAD-RXN

  • common-name:
    • d-lactate dehydrogenase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • FERMENTATION-PWY, mixed acid fermentation:
    • 10 reactions found over 16 reactions in the full pathway
  • PWY4LZ-257, superpathway of fermentation (Chlamydomonas reinhardtii):
    • 4 reactions found over 7 reactions in the full pathway
  • ALACAT2-PWY, L-alanine degradation II (to D-lactate):
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6454, vancomycin resistance I:
    • 1 reactions found over 3 reactions in the full pathway
  • P122-PWY, heterolactic fermentation:
    • 14 reactions found over 18 reactions in the full pathway
  • PWY-6901, superpathway of glucose and xylose degradation:
    • 9 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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