Difference between revisions of "RXN-14396"
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(Created page with "Category:reaction == Reaction RXN-10061 == * common-name: ** 3-hydroxycerotyl-[acp] dehydrase ** (r)-3-hydroxycerotyl-[acp] dehydratase * ec-number: ** [http://enzyme.expa...") |
(Created page with "Category:reaction == Reaction GPPSYN-RXN == * common-name: ** geranyl diphosphate synthase ** prenyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.1 ec-2.5...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction GPPSYN-RXN == |
* common-name: | * common-name: | ||
− | ** | + | ** geranyl diphosphate synthase |
− | ** | + | ** prenyltransferase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.5.1.1 ec-2.5.1.1] |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[CPD-4211]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''=>''' 1 [[GERANYL-PP]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * Gene: [[E_subulatus_01546]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[E_subulatus_24160]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[E_subulatus_13199]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[E_subulatus_22337]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[E_subulatus_22336]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[E_subulatus_01543]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[E_subulatus_01208]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[E_subulatus_05634]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[E_subulatus_01544]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[E_subulatus_01545]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[E_subulatus_21262]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** '''8''' reactions found over '''4''' reactions in the full pathway | + | * [[PWY-7736]], stellatic acid biosynthesis: |
− | * [[ | + | ** '''2''' reactions found over '''8''' reactions in the full pathway |
− | ** ''' | + | * [[PWY-7410]], ipsdienol biosynthesis: |
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7141]], (3S)-linalool biosynthesis: | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-7709]], (3R)-linalool biosynthesis: | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-7102]], bisabolene biosynthesis (engineered): | ||
+ | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6859]], all-trans-farnesol biosynthesis: | ||
+ | ** '''2''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7182]], linalool biosynthesis I: | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-7659]], viridicatumtoxin biosynthesis: | ||
+ | ** '''1''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis: | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis: | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-5122]], geranyl diphosphate biosynthesis: | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | </div> | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
− | * METANETX-RXN : | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | {{#set: common-name= | + | * METANETX-RXN : MNXR97512 |
− | {{#set: ec-number=ec- | + | * RHEA: |
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22408 22408] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R01658 R01658] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P08524 P08524] | ||
+ | ** [http://www.uniprot.org/uniprot/P05369 P05369] | ||
+ | ** [http://www.uniprot.org/uniprot/P14324 P14324] | ||
+ | ** [http://www.uniprot.org/uniprot/P46376 P46376] | ||
+ | ** [http://www.uniprot.org/uniprot/Q45220 Q45220] | ||
+ | ** [http://www.uniprot.org/uniprot/P49350 P49350] | ||
+ | ** [http://www.uniprot.org/uniprot/Q50891 Q50891] | ||
+ | ** [http://www.uniprot.org/uniprot/P49349 P49349] | ||
+ | ** [http://www.uniprot.org/uniprot/Q09152 Q09152] | ||
+ | ** [http://www.uniprot.org/uniprot/P49351 P49351] | ||
+ | ** [http://www.uniprot.org/uniprot/P49352 P49352] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43315 Q43315] | ||
+ | ** [http://www.uniprot.org/uniprot/O24241 O24241] | ||
+ | ** [http://www.uniprot.org/uniprot/O24242 O24242] | ||
+ | ** [http://www.uniprot.org/uniprot/Q92334 Q92334] | ||
+ | ** [http://www.uniprot.org/uniprot/Q92218 Q92218] | ||
+ | ** [http://www.uniprot.org/uniprot/Q92235 Q92235] | ||
+ | ** [http://www.uniprot.org/uniprot/Q92250 Q92250] | ||
+ | ** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4] | ||
+ | ** [http://www.uniprot.org/uniprot/P49353 P49353] | ||
+ | ** [http://www.uniprot.org/uniprot/O04882 O04882] | ||
+ | ** [http://www.uniprot.org/uniprot/O65004 O65004] | ||
+ | </div> | ||
+ | {{#set: common-name=geranyl diphosphate synthase|prenyltransferase}} | ||
+ | {{#set: ec-number=ec-2.5.1.1}} | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=11}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=11}} |
{{#set: reconstruction category=annotation}} | {{#set: reconstruction category=annotation}} | ||
{{#set: reconstruction tool=pathwaytools}} | {{#set: reconstruction tool=pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
{{#set: reconstruction source=ectocarpus_subulatus}} | {{#set: reconstruction source=ectocarpus_subulatus}} |
Revision as of 19:06, 17 March 2021
Contents
Reaction GPPSYN-RXN
- common-name:
- geranyl diphosphate synthase
- prenyltransferase
- ec-number:
- direction:
- left-to-right
Reaction formula
- 1 CPD-4211[c] + 1 DELTA3-ISOPENTENYL-PP[c] => 1 GERANYL-PP[c] + 1 PPI[c]
Gene(s) associated with this reaction
- Gene: E_subulatus_01546
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: E_subulatus_24160
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: E_subulatus_13199
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: E_subulatus_22337
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: E_subulatus_22336
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: E_subulatus_01543
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: E_subulatus_01208
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: E_subulatus_05634
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: E_subulatus_01544
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: E_subulatus_01545
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: E_subulatus_21262
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7736, stellatic acid biosynthesis:
- 2 reactions found over 8 reactions in the full pathway
- PWY-7410, ipsdienol biosynthesis:
- 2 reactions found over 4 reactions in the full pathway
- PWY-7141, (3S)-linalool biosynthesis:
- 1 reactions found over 2 reactions in the full pathway
- PWY-7709, (3R)-linalool biosynthesis:
- 1 reactions found over 2 reactions in the full pathway
- PWY-7102, bisabolene biosynthesis (engineered):
- 2 reactions found over 6 reactions in the full pathway
- PWY-6859, all-trans-farnesol biosynthesis:
- 2 reactions found over 4 reactions in the full pathway
- PWY-7182, linalool biosynthesis I:
- 1 reactions found over 2 reactions in the full pathway
- PWY-7659, viridicatumtoxin biosynthesis:
- 1 reactions found over 9 reactions in the full pathway
- PWY-5123, trans, trans-farnesyl diphosphate biosynthesis:
- 2 reactions found over 3 reactions in the full pathway
- PWY-6383, mono-trans, poly-cis decaprenyl phosphate biosynthesis:
- 2 reactions found over 5 reactions in the full pathway
- PWY-5122, geranyl diphosphate biosynthesis:
- 1 reactions found over 1 reactions in the full pathway
Reconstruction information
- category: annotation; source: ectocarpus_subulatus; tool: pathwaytools; comment: n.a
External links