Difference between revisions of "RXN-22206"

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(Created page with "Category:reaction == Reaction OROPRIBTRANS-RXN == * common-name: ** orotate phosphoribosyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.4.2.10 ec-2.4.2.10] *...")
(Created page with "Category:reaction == Reaction DIAMINOPIMDECARB-RXN == * common-name: ** diaminopimelate decarboxylase * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.20 ec-4.1.1.20] *...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction OROPRIBTRANS-RXN ==
+
== Reaction DIAMINOPIMDECARB-RXN ==
 
* common-name:
 
* common-name:
−
** orotate phosphoribosyltransferase
+
** diaminopimelate decarboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.2.10 ec-2.4.2.10]
+
** [http://enzyme.expasy.org/EC/4.1.1.20 ec-4.1.1.20]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[OROTIDINE-5-PHOSPHATE]][c] '''+''' 1 [[PPI]][c] '''<=>''' 1 [[OROTATE]][c] '''+''' 1 [[PRPP]][c]
+
* 1 [[MESO-DIAMINOPIMELATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[LYS]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[E_subulatus_04924]]
−
* Gene: [[E_subulatus_20069]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_20067]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[E_subulatus_20075]]
+
* Gene: [[E_subulatus_04927]]
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_20073]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_20070]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_20068]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_20071]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_20072]]
+
* Gene: [[E_subulatus_04925]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_20074]]
+
* Gene: [[E_subulatus_04926]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7790]], UMP biosynthesis II:
+
* [[PWY-2941]], L-lysine biosynthesis II:
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7791]], UMP biosynthesis III:
+
* [[PWY-2942]], L-lysine biosynthesis III:
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-5686]], UMP biosynthesis I:
+
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5097]], L-lysine biosynthesis VI:
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* METANETX-RXN : MNXR102231
+
* METANETX-RXN : MNXR97141
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10383 10383]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15102 15102]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01870 R01870]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P08309 P08309]
+
** [http://www.uniprot.org/uniprot/P19572 P19572]
−
** [http://www.uniprot.org/uniprot/P11172 P11172]
+
** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
−
** [http://www.uniprot.org/uniprot/P18132 P18132]
+
** [http://www.uniprot.org/uniprot/P44316 P44316]
−
** [http://www.uniprot.org/uniprot/P77889 P77889]
+
** [http://www.uniprot.org/uniprot/P56129 P56129]
−
** [http://www.uniprot.org/uniprot/P0A5U0 P0A5U0]
+
** [http://www.uniprot.org/uniprot/O67262 O67262]
−
** [http://www.uniprot.org/uniprot/Q9PIR1 Q9PIR1]
+
** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
−
** [http://www.uniprot.org/uniprot/O67742 O67742]
+
** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
−
** [http://www.uniprot.org/uniprot/O58855 O58855]
+
** [http://www.uniprot.org/uniprot/P00861 P00861]
−
** [http://www.uniprot.org/uniprot/Q9Z7U6 Q9Z7U6]
+
** [http://www.uniprot.org/uniprot/O27390 O27390]
−
** [http://www.uniprot.org/uniprot/Q9Y9D8 Q9Y9D8]
+
** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
−
** [http://www.uniprot.org/uniprot/P56814 P56814]
+
** [http://www.uniprot.org/uniprot/Q58497 Q58497]
−
** [http://www.uniprot.org/uniprot/Q58509 Q58509]
+
** [http://www.uniprot.org/uniprot/O29458 O29458]
−
** [http://www.uniprot.org/uniprot/O28533 O28533]
+
** [http://www.uniprot.org/uniprot/P41023 P41023]
−
** [http://www.uniprot.org/uniprot/Q9CGM8 Q9CGM8]
+
** [http://www.uniprot.org/uniprot/P23630 P23630]
−
** [http://www.uniprot.org/uniprot/P25972 P25972]
+
** [http://www.uniprot.org/uniprot/P09890 P09890]
−
** [http://www.uniprot.org/uniprot/O27888 O27888]
+
** [http://www.uniprot.org/uniprot/Q55484 Q55484]
−
** [http://www.uniprot.org/uniprot/P65915 P65915]
+
** [http://www.uniprot.org/uniprot/O05321 O05321]
−
** [http://www.uniprot.org/uniprot/P46534 P46534]
 
−
** [http://www.uniprot.org/uniprot/P43855 P43855]
 
−
** [http://www.uniprot.org/uniprot/P31754 P31754]
 
−
** [http://www.uniprot.org/uniprot/P18904 P18904]
 
−
** [http://www.uniprot.org/uniprot/Q01637 Q01637]
 
−
** [http://www.uniprot.org/uniprot/P09556 P09556]
 
−
** [http://www.uniprot.org/uniprot/P21846 P21846]
 
−
** [http://www.uniprot.org/uniprot/P35788 P35788]
 
−
** [http://www.uniprot.org/uniprot/P08870 P08870]
 
−
** [http://www.uniprot.org/uniprot/Q18516 Q18516]
 
−
** [http://www.uniprot.org/uniprot/Q45918 Q45918]
 
−
** [http://www.uniprot.org/uniprot/Q42586 Q42586]
 
−
** [http://www.uniprot.org/uniprot/P41923 P41923]
 
−
** [http://www.uniprot.org/uniprot/Q55574 Q55574]
 
−
** [http://www.uniprot.org/uniprot/Q42942 Q42942]
 
−
** [http://www.uniprot.org/uniprot/O76139 O76139]
 
−
** [http://www.uniprot.org/uniprot/O61790 O61790]
 
−
** [http://www.uniprot.org/uniprot/Q9X8R7 Q9X8R7]
 
−
** [http://www.uniprot.org/uniprot/O94331 O94331]
 
−
** [http://www.uniprot.org/uniprot/P30402 P30402]
 
−
** [http://www.uniprot.org/uniprot/P13298 P13298]
 
−
** [http://www.uniprot.org/uniprot/P0A7E3 P0A7E3]
 
 
</div>
 
</div>
−
{{#set: common-name=orotate phosphoribosyltransferase}}
+
{{#set: common-name=diaminopimelate decarboxylase}}
−
{{#set: ec-number=ec-2.4.2.10}}
+
{{#set: ec-number=ec-4.1.1.20}}
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=9}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=4}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
 
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Revision as of 19:06, 17 March 2021

Reaction DIAMINOPIMDECARB-RXN

  • common-name:
    • diaminopimelate decarboxylase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2941, L-lysine biosynthesis II:
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-2942, L-lysine biosynthesis III:
    • 6 reactions found over 7 reactions in the full pathway
  • DAPLYSINESYN-PWY, L-lysine biosynthesis I:
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-5097, L-lysine biosynthesis VI:
    • 7 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//esubgem/index.php?title=RXN-22206&oldid=41037"