Difference between revisions of "RXN-16165"

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(Created page with "Category:reaction == Reaction RXN-10955 == * direction: ** left-to-right * ec_number: ** ec-3.1.3 == Reaction formula == * 1 CPD-1107[c] '''+''' 1 WATER[c] '''=>''...")
(Created page with "Category:reaction == Reaction SAMDECARB-RXN == * common-name: ** s-adenosylmethionine decarboxylase * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.50 ec-4.1.1.50] * di...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-10955 ==
+
== Reaction SAMDECARB-RXN ==
 +
* common-name:
 +
** s-adenosylmethionine decarboxylase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/4.1.1.50 ec-4.1.1.50]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* ec_number:
 
−
** ec-3.1.3
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-1107]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-178]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[PROTON]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINAMINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[E_subulatus_16520]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_19988]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_21393]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_21395]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_21392]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_21397]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_21396]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_21391]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_21394]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6365]], D-myo-inositol (3,4,5,6)-tetrakisphosphate biosynthesis:
+
* [[PWY-6834]], spermidine biosynthesis III:
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[ARGSPECAT-PWY]], spermine biosynthesis:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[esub_adding_annot_form]]; tool: [[curation]]; comment: annotation
+
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR116607
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR95455
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15982 15982]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00178 R00178]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P82184 P82184]
 +
** [http://www.uniprot.org/uniprot/P21182 P21182]
 +
** [http://www.uniprot.org/uniprot/P0A7F6 P0A7F6]
 +
** [http://www.uniprot.org/uniprot/P17707 P17707]
 +
** [http://www.uniprot.org/uniprot/P28918 P28918]
 +
** [http://www.uniprot.org/uniprot/P17708 P17708]
 +
** [http://www.uniprot.org/uniprot/P50243 P50243]
 +
** [http://www.uniprot.org/uniprot/P46255 P46255]
 +
** [http://www.uniprot.org/uniprot/Q04694 Q04694]
 +
** [http://www.uniprot.org/uniprot/Q42679 Q42679]
 +
** [http://www.uniprot.org/uniprot/Q42829 Q42829]
 +
** [http://www.uniprot.org/uniprot/P79888 P79888]
 +
** [http://www.uniprot.org/uniprot/O04009 O04009]
 +
** [http://www.uniprot.org/uniprot/O24575 O24575]
 +
** [http://www.uniprot.org/uniprot/Q43820 Q43820]
 +
** [http://www.uniprot.org/uniprot/Q39676 Q39676]
 +
** [http://www.uniprot.org/uniprot/Q39677 Q39677]
 +
** [http://www.uniprot.org/uniprot/O49972 O49972]
 +
** [http://www.uniprot.org/uniprot/O65354 O65354]
 +
** [http://www.uniprot.org/uniprot/O02655 O02655]
 +
</div>
 +
{{#set: common-name=s-adenosylmethionine decarboxylase}}
 +
{{#set: ec-number=ec-4.1.1.50}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec_number=ec-3.1.3}}
+
{{#set: nb gene associated=9}}
−
{{#set: nb gene associated=0}}
+
{{#set: nb pathway associated=3}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction comment=annotation}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
−
{{#set: reconstruction source=esub_adding_annot_form}}
 

Revision as of 19:06, 17 March 2021

Reaction SAMDECARB-RXN

  • common-name:
    • s-adenosylmethionine decarboxylase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6834, spermidine biosynthesis III:
    • 2 reactions found over 4 reactions in the full pathway
  • BSUBPOLYAMSYN-PWY, spermidine biosynthesis I:
    • 2 reactions found over 2 reactions in the full pathway
  • ARGSPECAT-PWY, spermine biosynthesis:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//esubgem/index.php?title=RXN-16165&oldid=41100"