Difference between revisions of "TransportSeed-AMP"

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(Created page with "Category:reaction == Reaction RXN0-2161 == * common-name: ** l-serine:trnasec ligase (amp-forming) ** serine-trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/6.1.1...")
(Created page with "Category:reaction == Reaction RXN3O-5293 == * direction: ** left-to-right * ec_number: ** ec-2.3.1.86 ** ec-1.3.1.10 == Reaction formula == * 1 NADPH[c] '''+''' 1 Oc...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN0-2161 ==
+
== Reaction RXN3O-5293 ==
* common-name:
 
** l-serine:trnasec ligase (amp-forming)
 
** serine-trna ligase
 
* ec-number:
 
** [http://enzyme.expasy.org/EC/6.1.1.11 ec-6.1.1.11]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* ec_number:
 +
** ec-2.3.1.86
 +
** ec-1.3.1.10
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[tRNA-Sec]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[L-seryl-SEC-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[NADPH]][c] '''+''' 1 [[Octadec-2-enoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[Stearoyl-ACPs]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[E_subulatus_18290]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_17805]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[E_subulatus_18289]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes):
+
* [[PWY3O-355]], stearate biosynthesis III (fungi):
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
* [[PWY0-901]], L-selenocysteine biosynthesis I (bacteria):
 
** '''1''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[esub_adding_annot_form]]; tool: [[curation]]; comment: annotation
 
== External links  ==
 
== External links  ==
* METANETX-RXN : MNXR123138
+
* METANETX-RXN : MNXR123641
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42581 42581]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R08218 R08218]
 
{{#set: common-name=serine-trna ligase|l-serine:trnasec ligase (amp-forming)}}
 
{{#set: ec-number=ec-6.1.1.11}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: nb gene associated=3}}
+
{{#set: ec_number=ec-1.3.1.10|ec-2.3.1.86}}
{{#set: nb pathway associated=2}}
+
{{#set: nb gene associated=0}}
{{#set: reconstruction category=annotation}}
+
{{#set: nb pathway associated=1}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction category=manual}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction tool=curation}}
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction comment=annotation}}
 +
{{#set: reconstruction source=esub_adding_annot_form}}

Revision as of 19:06, 17 March 2021

Reaction RXN3O-5293

  • direction:
    • left-to-right
  • ec_number:
    • ec-2.3.1.86
    • ec-1.3.1.10

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY3O-355, stearate biosynthesis III (fungi):
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR123641