Difference between revisions of "ORNCARBAMTRANSFER-RXN"

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(Created page with "Category:reaction == Reaction H2NEOPTERINALDOL-RXN == * direction: ** reversible * ec_number: ** ec-4.1.2.25 == Reaction formula == * 1 DIHYDRO-NEO-PTERIN[c] '''<=>'''...")
(Created page with "Category:reaction == Reaction GTP-CYCLOHYDRO-II-RXN == * common-name: ** gtp cyclohydrolase ii * ec-number: ** [http://enzyme.expasy.org/EC/3.5.4.25 ec-3.5.4.25] * directi...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction H2NEOPTERINALDOL-RXN ==
+
== Reaction GTP-CYCLOHYDRO-II-RXN ==
 +
* common-name:
 +
** gtp cyclohydrolase ii
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/3.5.4.25 ec-3.5.4.25]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* ec_number:
 
−
** ec-4.1.2.25
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DIHYDRO-NEO-PTERIN]][c] '''<=>''' 1 [[AMINO-OH-HYDROXYMETHYL-DIHYDROPTERIDINE]][c] '''+''' 1 [[GLYCOLALDEHYDE]][c]
+
* 1 [[GTP]][c] '''+''' 3 [[WATER]][c] '''=>''' 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''+''' 1 [[FORMATE]][c] '''+''' 1 [[PPI]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[E_subulatus_18127]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_04571]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_04573]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_04572]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_18126]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6148]], tetrahydromethanopterin biosynthesis:
+
* [[PWY-7991]], toxoflavin biosynthesis:
−
** '''2''' reactions found over '''14''' reactions in the full pathway
 
−
* [[PWY-6797]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (Methanocaldococcus):
 
 
** '''3''' reactions found over '''7''' reactions in the full pathway
 
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6168]], flavin biosynthesis III (fungi):
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 
* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia):
 
* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia):
 
** '''4''' reactions found over '''5''' reactions in the full pathway
 
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6147]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[esub_adding_gp_form]]; tool: [[curation]]; comment: gap-filling
+
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR125603
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR100455
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10541 10541]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23705 23705]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03504 R03504]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00425 R00425]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P22291 P22291]
+
** [http://www.uniprot.org/uniprot/P0A7I7 P0A7I7]
−
** [http://www.uniprot.org/uniprot/Q9CGE4 Q9CGE4]
+
** [http://www.uniprot.org/uniprot/Q9PNU4 Q9PNU4]
−
** [http://www.uniprot.org/uniprot/Q9JUL3 Q9JUL3]
+
** [http://www.uniprot.org/uniprot/O08315 O08315]
−
** [http://www.uniprot.org/uniprot/P28823 P28823]
+
** [http://www.uniprot.org/uniprot/O66679 O66679]
−
** [http://www.uniprot.org/uniprot/P29251 P29251]
+
** [http://www.uniprot.org/uniprot/Q9PHU4 Q9PHU4]
−
** [http://www.uniprot.org/uniprot/P53848 P53848]
+
** [http://www.uniprot.org/uniprot/O25484 O25484]
−
** [http://www.uniprot.org/uniprot/O75013 O75013]
+
** [http://www.uniprot.org/uniprot/P0A5V0 P0A5V0]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/P0A7I8 P0A7I8]
−
{{#set: ec_number=ec-4.1.2.25}}
+
** [http://www.uniprot.org/uniprot/P43525 P43525]
−
{{#set: nb gene associated=0}}
+
** [http://www.uniprot.org/uniprot/P17620 P17620]
 +
** [http://www.uniprot.org/uniprot/P38066 P38066]
 +
** [http://www.uniprot.org/uniprot/P50139 P50139]
 +
** [http://www.uniprot.org/uniprot/P74104 P74104]
 +
** [http://www.uniprot.org/uniprot/O24019 O24019]
 +
** [http://www.uniprot.org/uniprot/P51695 P51695]
 +
** [http://www.uniprot.org/uniprot/P50855 P50855]
 +
</div>
 +
{{#set: common-name=gtp cyclohydrolase ii}}
 +
{{#set: ec-number=ec-3.5.4.25}}
 +
{{#set: direction=left-to-right}}
 +
{{#set: nb gene associated=5}}
 
{{#set: nb pathway associated=4}}
 
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction comment=gap-filling}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=esub_adding_gp_form}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Revision as of 19:07, 17 March 2021

Reaction GTP-CYCLOHYDRO-II-RXN

  • common-name:
    • gtp cyclohydrolase ii
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7991, toxoflavin biosynthesis:
    • 3 reactions found over 7 reactions in the full pathway
  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants):
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi):
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-7539, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia):
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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