Difference between revisions of "THI-P-SYN-RXN"

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(Created page with "Category:reaction == Reaction RXN-9655 == * common-name: ** 3-hydroxydecanoyl-[acp] dehydrase * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86] ** [http:/...")
(Created page with "Category:reaction == Reaction DIHYDROXYISOVALDEHYDRAT-RXN == * common-name: ** 2,3-dihydroxy-isovalerate dehydratase * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.9 e...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9655 ==
+
== Reaction DIHYDROXYISOVALDEHYDRAT-RXN ==
 
* common-name:
 
* common-name:
−
** 3-hydroxydecanoyl-[acp] dehydrase
+
** 2,3-dihydroxy-isovalerate dehydratase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/4.2.1.9 ec-4.2.1.9]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* synonymous:
 
−
** hddase
 
−
** β-hydroxyacyl-acp dehydrase
 
−
** faba
 
−
** d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase
 
−
** β-hydroxyacyl-acyl carrier protein dehydratase
 
−
** β-hydroxydecanoyl thiol ester dehydrase
 
−
** (3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
 
−
** β-hydroxydecanoate dehydrase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Beta-hydroxydecanoyl-ACPs]][c] '''=>''' 1 [[Trans-D2-decenoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[CPD-13357]][c] '''=>''' 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_18602]]
+
* Gene: [[E_subulatus_10889]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_15038]]
+
* Gene: [[E_subulatus_10888]]
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_15037]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5971]], palmitate biosynthesis (type II fatty acid synthase):
+
* [[PWY-7111]], pyruvate fermentation to isobutanol (engineered):
−
** '''30''' reactions found over '''31''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5994]], palmitate biosynthesis (type I fatty acid synthase):
+
* [[VALSYN-PWY]], L-valine biosynthesis:
−
** '''30''' reactions found over '''31''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY0-862]], (5Z)-dodecenoate biosynthesis I:
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR122928
+
* METANETX-RXN : MNXR97358
−
{{#set: common-name=3-hydroxydecanoyl-[acp] dehydrase}}
+
* RHEA:
−
{{#set: ec-number=ec-4.2.1.59|ec-2.3.1.85|ec-2.3.1.86}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24810 24810]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04441 R04441]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P55186 P55186]
 +
** [http://www.uniprot.org/uniprot/Q9JUE0 Q9JUE0]
 +
** [http://www.uniprot.org/uniprot/P05791 P05791]
 +
** [http://www.uniprot.org/uniprot/Q9UZ03 Q9UZ03]
 +
** [http://www.uniprot.org/uniprot/P44851 P44851]
 +
** [http://www.uniprot.org/uniprot/Q02139 Q02139]
 +
** [http://www.uniprot.org/uniprot/Q9PJ98 Q9PJ98]
 +
** [http://www.uniprot.org/uniprot/P39522 P39522]
 +
{{#set: common-name=2,3-dihydroxy-isovalerate dehydratase}}
 +
{{#set: ec-number=ec-4.2.1.9}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: synonymous=faba|d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase|β-hydroxyacyl-acyl carrier protein dehydratase|β-hydroxydecanoyl thiol ester dehydrase|(3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase|β-hydroxydecanoate dehydrase|β-hydroxyacyl-acp dehydrase|hddase}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb pathway associated=2}}
−
{{#set: nb pathway associated=3}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Revision as of 19:07, 17 March 2021

Reaction DIHYDROXYISOVALDEHYDRAT-RXN

  • common-name:
    • 2,3-dihydroxy-isovalerate dehydratase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7111, pyruvate fermentation to isobutanol (engineered):
    • 3 reactions found over 5 reactions in the full pathway
  • VALSYN-PWY, L-valine biosynthesis:
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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