Difference between revisions of "MANNKIN-RXN"

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(Created page with "Category:reaction == Reaction RXN0-302 == * common-name: ** 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase * ec-number: ** [http://enzyme.expasy.org/EC/4.6.1.12 ec-...")
(Created page with "Category:reaction == Reaction RIBULP3EPIM-RXN == * common-name: ** ribulose-phosphate 3-epimerase * ec-number: ** [http://enzyme.expasy.org/EC/5.1.3.1 ec-5.1.3.1] * direct...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-302 ==
+
== Reaction RIBULP3EPIM-RXN ==
 
* common-name:
 
* common-name:
−
** 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase
+
** ribulose-phosphate 3-epimerase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.6.1.12 ec-4.6.1.12]
+
** [http://enzyme.expasy.org/EC/5.1.3.1 ec-5.1.3.1]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET]][c] '''=>''' 1 [[2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE]][c] '''+''' 1 [[CMP]][c]
+
* 1 [[RIBULOSE-5P]][c] '''<=>''' 1 [[XYLULOSE-5-PHOSPHATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_04681]]
+
* Gene: [[E_subulatus_07361]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_18114]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I:
+
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[P21-PWY]], pentose phosphate pathway (partial):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch) I:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
 +
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-5723]], Rubisco shunt:
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[P124-PWY]], Bifidobacterium shunt:
 +
** '''11''' reactions found over '''15''' reactions in the full pathway
 +
* [[P122-PWY]], heterolactic fermentation:
 +
** '''14''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle):
 
** '''7''' reactions found over '''9''' reactions in the full pathway
 
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7560]], methylerythritol phosphate pathway II:
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR101424
+
* METANETX-RXN : MNXR104083
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23865 23865]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13680 13680]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05637 R05637]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01529 R01529]
−
{{#set: common-name=2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase}}
+
* UNIPROT:
−
{{#set: ec-number=ec-4.6.1.12}}
+
** [http://www.uniprot.org/uniprot/P40117 P40117]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/Q9CEB9 Q9CEB9]
−
{{#set: nb gene associated=1}}
+
** [http://www.uniprot.org/uniprot/P0AG07 P0AG07]
−
{{#set: nb pathway associated=2}}
+
** [http://www.uniprot.org/uniprot/Q9PI57 Q9PI57]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/Q9JUA9 Q9JUA9]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P45455 P45455]
 +
** [http://www.uniprot.org/uniprot/Q43157 Q43157]
 +
** [http://www.uniprot.org/uniprot/Q43843 Q43843]
 +
** [http://www.uniprot.org/uniprot/P74061 P74061]
 +
** [http://www.uniprot.org/uniprot/O23782 O23782]
 +
** [http://www.uniprot.org/uniprot/P51012 P51012]
 +
{{#set: common-name=ribulose-phosphate 3-epimerase}}
 +
{{#set: ec-number=ec-5.1.3.1}}
 +
{{#set: direction=reversible}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=8}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Revision as of 19:07, 17 March 2021

Reaction RIBULP3EPIM-RXN

  • common-name:
    • ribulose-phosphate 3-epimerase
  • ec-number:
  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
    • 11 reactions found over 12 reactions in the full pathway
  • P21-PWY, pentose phosphate pathway (partial):
    • 3 reactions found over 3 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch) I:
    • 5 reactions found over 5 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle:
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-5723, Rubisco shunt:
    • 9 reactions found over 10 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt:
    • 11 reactions found over 15 reactions in the full pathway
  • P122-PWY, heterolactic fermentation:
    • 14 reactions found over 18 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (assimilatory RuMP Cycle):
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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