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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction 3.1.26.3-RXN == | + | == Reaction TransportSeed-NADPH == |
| − | * common-name:
| |
| − | ** ribonuclease iii
| |
| − | ** endoribonuclease
| |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/3.1.26.3 ec-3.1.26.3]
| |
| | * direction: | | * direction: |
| | ** left-to-right | | ** left-to-right |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[RNASE-III-MRNA-PROCESSING-SUBSTRATE]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[RNASE-III-PROCESSING-PRODUCT-MRNA]][c] '''+''' 2 [[mRNA-Fragments]][c] | + | * 1.0 [[NADPH]][e] '''=>''' 1.0 [[NADPH]][c] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * Gene: [[E_subulatus_13772]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[E_subulatus_21769]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[E_subulatus_21384]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[E_subulatus_21768]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[E_subulatus_21385]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[E_subulatus_21387]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[E_subulatus_12947]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[E_subulatus_21767]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[E_subulatus_21386]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[E_subulatus_12946]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[E_subulatus_21383]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[E_subulatus_12945]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[E_subulatus_19687]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[E_subulatus_19686]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[E_subulatus_19688]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[E_subulatus_13771]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | </div>
| |
| | == Pathway(s) == | | == Pathway(s) == |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a | + | * category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from extracellular to cytosol compartment |
| | == External links == | | == External links == |
| − | * METANETX-RXN : MNXR115277
| |
| − | * UNIPROT:
| |
| − | ** [http://www.uniprot.org/uniprot/Q9PM40 Q9PM40]
| |
| − | ** [http://www.uniprot.org/uniprot/P51833 P51833]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9CHD0 Q9CHD0]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9JVD3 Q9JVD3]
| |
| − | ** [http://www.uniprot.org/uniprot/P44441 P44441]
| |
| − | ** [http://www.uniprot.org/uniprot/P0A7Y0 P0A7Y0]
| |
| − | ** [http://www.uniprot.org/uniprot/P09155 P09155]
| |
| − | ** [http://www.uniprot.org/uniprot/Q52698 Q52698]
| |
| − | ** [http://www.uniprot.org/uniprot/Q49034 Q49034]
| |
| − | ** [http://www.uniprot.org/uniprot/O69469 O69469]
| |
| − | {{#set: common-name=ribonuclease iii|endoribonuclease}}
| |
| − | {{#set: ec-number=ec-3.1.26.3}}
| |
| | {{#set: direction=left-to-right}} | | {{#set: direction=left-to-right}} |
| − | {{#set: nb gene associated=16}} | + | {{#set: nb gene associated=0}} |
| | {{#set: nb pathway associated=0}} | | {{#set: nb pathway associated=0}} |
| − | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=manual}} |
| − | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=curation}} |
| − | {{#set: reconstruction comment=n.a}} | + | {{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}} |
| − | {{#set: reconstruction source=ectocarpus_subulatus}} | + | {{#set: reconstruction source=import_from_medium}} |
