Difference between revisions of "QUINOLINATE-SYNTHA-RXN"

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(Created page with "Category:reaction == Reaction BIOTIN-CARBOXYL-RXN == * common-name: ** biotin carboxylase * ec-number: ** [http://enzyme.expasy.org/EC/6.3.4.14 ec-6.3.4.14] * direction: *...")
(Created page with "Category:reaction == Reaction GLYOHMETRANS-RXN == * common-name: ** 5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase * ec-number: ** [http://enzyme.expasy.o...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction BIOTIN-CARBOXYL-RXN ==
+
== Reaction GLYOHMETRANS-RXN ==
 
* common-name:
 
* common-name:
−
** biotin carboxylase
+
** 5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.4.14 ec-6.3.4.14]
+
** [http://enzyme.expasy.org/EC/2.1.2.1 ec-2.1.2.1]
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[biotin-L-lysine-in-BCCP-dimers]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[carboxybiotin-L-lysine-in-BCCP-dimers]][c]
+
* 1 [[SER]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[GLY]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[E_subulatus_01358]]
−
* Gene: [[E_subulatus_04286]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_21382]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_04285]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_21148]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_21387]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_05704]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_21386]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_22691]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_21384]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_21151]]
+
* Gene: [[E_subulatus_23643]]
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_21150]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_08408]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_21149]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_05705]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_21385]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_21383]]
+
* Gene: [[E_subulatus_11692]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5744]], glyoxylate assimilation:
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''3''' reactions found over '''13''' reactions in the full pathway
+
* [[PWY-2161]], folate polyglutamylation:
−
* [[PWY0-1264]], biotin-carboxyl carrier protein assembly:
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
* [[1CMET2-PWY]], folate transformations III (E. coli):
−
* [[PWY-5743]], 3-hydroxypropanoate cycle:
+
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-2201]], folate transformations I:
 +
** '''12''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-3841]], folate transformations II (plants):
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-181]], photorespiration:
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-3661]], glycine betaine degradation I:
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-3661-1]], glycine betaine degradation II (mammalian):
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
 +
** '''10''' reactions found over '''24''' reactions in the full pathway
 +
* [[GLYSYN-PWY]], glycine biosynthesis I:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-1622]], formaldehyde assimilation I (serine pathway):
 
** '''6''' reactions found over '''13''' reactions in the full pathway
 
** '''6''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle:
+
</div>
−
** '''9''' reactions found over '''18''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* METANETX-RXN : MNXR115738
+
* METANETX-RXN : MNXR115952
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13502 13502]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15484 15484]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04385 R04385]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00945 R00945]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q06862 Q06862]
+
** [http://www.uniprot.org/uniprot/P35623 P35623]
−
** [http://www.uniprot.org/uniprot/O67483 O67483]
+
** [http://www.uniprot.org/uniprot/P34898 P34898]
−
** [http://www.uniprot.org/uniprot/Q9CHF3 Q9CHF3]
+
** [http://www.uniprot.org/uniprot/P34899 P34899]
−
** [http://www.uniprot.org/uniprot/Q58626 Q58626]
+
** [http://www.uniprot.org/uniprot/P34896 P34896]
−
** [http://www.uniprot.org/uniprot/P43873 P43873]
+
** [http://www.uniprot.org/uniprot/Q9CHW7 Q9CHW7]
−
** [http://www.uniprot.org/uniprot/Q9PN09 Q9PN09]
+
** [http://www.uniprot.org/uniprot/P34897 P34897]
−
** [http://www.uniprot.org/uniprot/Q9JW07 Q9JW07]
+
** [http://www.uniprot.org/uniprot/P0A2E1 P0A2E1]
−
** [http://www.uniprot.org/uniprot/P24182 P24182]
+
** [http://www.uniprot.org/uniprot/O23254 O23254]
−
** [http://www.uniprot.org/uniprot/O04983 O04983]
+
** [http://www.uniprot.org/uniprot/O53441 O53441]
−
** [http://www.uniprot.org/uniprot/O81273 O81273]
+
** [http://www.uniprot.org/uniprot/O08370 O08370]
−
** [http://www.uniprot.org/uniprot/Q42777 Q42777]
+
** [http://www.uniprot.org/uniprot/P43844 P43844]
−
** [http://www.uniprot.org/uniprot/Q39825 Q39825]
+
** [http://www.uniprot.org/uniprot/Q58992 Q58992]
−
** [http://www.uniprot.org/uniprot/O23960 O23960]
+
** [http://www.uniprot.org/uniprot/O66776 O66776]
−
** [http://www.uniprot.org/uniprot/O52602 O52602]
+
** [http://www.uniprot.org/uniprot/Q9XAY7 Q9XAY7]
−
** [http://www.uniprot.org/uniprot/Q9R9I4 Q9R9I4]
+
** [http://www.uniprot.org/uniprot/P47634 P47634]
 +
** [http://www.uniprot.org/uniprot/Q9WZH9 Q9WZH9]
 +
** [http://www.uniprot.org/uniprot/P56089 P56089]
 +
** [http://www.uniprot.org/uniprot/O53615 O53615]
 +
** [http://www.uniprot.org/uniprot/O83349 O83349]
 +
** [http://www.uniprot.org/uniprot/Q9ZMP7 Q9ZMP7]
 +
** [http://www.uniprot.org/uniprot/O51547 O51547]
 +
** [http://www.uniprot.org/uniprot/O84439 O84439]
 +
** [http://www.uniprot.org/uniprot/P24531 P24531]
 +
** [http://www.uniprot.org/uniprot/P39148 P39148]
 +
** [http://www.uniprot.org/uniprot/P24060 P24060]
 +
** [http://www.uniprot.org/uniprot/P37292 P37292]
 +
** [http://www.uniprot.org/uniprot/P34895 P34895]
 +
** [http://www.uniprot.org/uniprot/P34894 P34894]
 +
** [http://www.uniprot.org/uniprot/P49357 P49357]
 +
** [http://www.uniprot.org/uniprot/P49358 P49358]
 +
** [http://www.uniprot.org/uniprot/P50433 P50433]
 +
** [http://www.uniprot.org/uniprot/P37291 P37291]
 +
** [http://www.uniprot.org/uniprot/P78011 P78011]
 +
** [http://www.uniprot.org/uniprot/P77962 P77962]
 +
** [http://www.uniprot.org/uniprot/Q9SVM4 Q9SVM4]
 +
** [http://www.uniprot.org/uniprot/Q9SUU0 Q9SUU0]
 +
** [http://www.uniprot.org/uniprot/Q9SZJ5 Q9SZJ5]
 +
** [http://www.uniprot.org/uniprot/O23984 O23984]
 +
** [http://www.uniprot.org/uniprot/P0A825 P0A825]
 +
** [http://www.uniprot.org/uniprot/P07511 P07511]
 
</div>
 
</div>
−
{{#set: common-name=biotin carboxylase}}
+
{{#set: common-name=5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase}}
−
{{#set: ec-number=ec-6.3.4.14}}
+
{{#set: ec-number=ec-2.1.2.1}}
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: nb gene associated=16}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=10}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Revision as of 19:07, 17 March 2021

Reaction GLYOHMETRANS-RXN

  • common-name:
    • 5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase
  • ec-number:
  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2161, folate polyglutamylation:
    • 5 reactions found over 5 reactions in the full pathway
  • 1CMET2-PWY, folate transformations III (E. coli):
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-2201, folate transformations I:
    • 12 reactions found over 10 reactions in the full pathway
  • PWY-3841, folate transformations II (plants):
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-181, photorespiration:
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-3661, glycine betaine degradation I:
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-3661-1, glycine betaine degradation II (mammalian):
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic):
    • 10 reactions found over 24 reactions in the full pathway
  • GLYSYN-PWY, glycine biosynthesis I:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-1622, formaldehyde assimilation I (serine pathway):
    • 6 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





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