Difference between revisions of "DTDPGLUCDEHYDRAT-RXN"

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(Created page with "Category:reaction == Reaction IPPISOM-RXN == * common-name: ** isopentenyl-diphosphate delta-isomerase * ec-number: ** [http://enzyme.expasy.org/EC/5.3.3.2 ec-5.3.3.2] * d...")
(Created page with "Category:reaction == Reaction SERINE-O-ACETTRAN-RXN == * common-name: ** serine acetyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.30 ec-2.3.1.30] * dire...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction IPPISOM-RXN ==
+
== Reaction SERINE-O-ACETTRAN-RXN ==
 
* common-name:
 
* common-name:
−
** isopentenyl-diphosphate delta-isomerase
+
** serine acetyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.3.3.2 ec-5.3.3.2]
+
** [http://enzyme.expasy.org/EC/2.3.1.30 ec-2.3.1.30]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DELTA3-ISOPENTENYL-PP]][c] '''<=>''' 1 [[CPD-4211]][c]
+
* 1 [[ACETYL-COA]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[ACETYLSERINE]][c] '''+''' 1 [[CO-A]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_00110]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[E_subulatus_15296]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_20941]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_20940]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_20942]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_19839]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_00109]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_15297]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-6936]], seleno-amino acid biosynthesis (plants):
−
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I:
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-7870]], L-cysteine biosynthesis VII (from S-sulfo-L-cysteine):
−
* [[PWY-7560]], methylerythritol phosphate pathway II:
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7391]], isoprene biosynthesis II (engineered):
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6174]], mevalonate pathway II (haloarchaea):
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7524]], mevalonate pathway III (Thermoplasma):
 
−
** '''4''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-922]], mevalonate pathway I (eukaryotes and bacteria):
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7102]], bisabolene biosynthesis (engineered):
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6859]], all-trans-farnesol biosynthesis:
 
 
** '''2''' reactions found over '''4''' reactions in the full pathway
 
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis:
+
* [[PWY-7274]], D-cycloserine biosynthesis:
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis:
+
* [[CYSTSYN-PWY]], L-cysteine biosynthesis I:
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR100796
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR104275
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23287 23287]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24560 24560]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01123 R01123]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00586 R00586]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P15496 P15496]
+
** [http://www.uniprot.org/uniprot/Q39533 Q39533]
−
** [http://www.uniprot.org/uniprot/Q10132 Q10132]
+
** [http://www.uniprot.org/uniprot/Q06750 Q06750]
−
** [http://www.uniprot.org/uniprot/Q38929 Q38929]
+
** [http://www.uniprot.org/uniprot/P71405 P71405]
−
** [http://www.uniprot.org/uniprot/Q42553 Q42553]
+
** [http://www.uniprot.org/uniprot/Q9JR86 Q9JR86]
−
** [http://www.uniprot.org/uniprot/P93355 P93355]
+
** [http://www.uniprot.org/uniprot/Q9PPF6 Q9PPF6]
−
** [http://www.uniprot.org/uniprot/O81691 O81691]
+
** [http://www.uniprot.org/uniprot/P23145 P23145]
−
** [http://www.uniprot.org/uniprot/Q9SAY0 Q9SAY0]
+
** [http://www.uniprot.org/uniprot/Q9CEI8 Q9CEI8]
−
** [http://www.uniprot.org/uniprot/O81660 O81660]
+
** [http://www.uniprot.org/uniprot/P43886 P43886]
−
** [http://www.uniprot.org/uniprot/O81659 O81659]
+
** [http://www.uniprot.org/uniprot/P32003 P32003]
−
{{#set: common-name=isopentenyl-diphosphate delta-isomerase}}
+
** [http://www.uniprot.org/uniprot/P29847 P29847]
−
{{#set: ec-number=ec-5.3.3.2}}
+
** [http://www.uniprot.org/uniprot/Q42588 Q42588]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/Q39218 Q39218]
−
{{#set: nb gene associated=2}}
+
** [http://www.uniprot.org/uniprot/Q42538 Q42538]
−
{{#set: nb pathway associated=10}}
+
** [http://www.uniprot.org/uniprot/P74089 P74089]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/Q8W2B8 Q8W2B8]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q8S895 Q8S895]
 +
** [http://www.uniprot.org/uniprot/P93544 P93544]
 +
** [http://www.uniprot.org/uniprot/O69218 O69218]
 +
** [http://www.uniprot.org/uniprot/O32979 O32979]
 +
** [http://www.uniprot.org/uniprot/P0A9D4 P0A9D4]
 +
</div>
 +
{{#set: common-name=serine acetyltransferase}}
 +
{{#set: ec-number=ec-2.3.1.30}}
 +
{{#set: direction=left-to-right}}
 +
{{#set: nb gene associated=6}}
 +
{{#set: nb pathway associated=4}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Revision as of 19:08, 17 March 2021

Reaction SERINE-O-ACETTRAN-RXN

  • common-name:
    • serine acetyltransferase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6936, seleno-amino acid biosynthesis (plants):
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7870, L-cysteine biosynthesis VII (from S-sulfo-L-cysteine):
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7274, D-cycloserine biosynthesis:
    • 1 reactions found over 6 reactions in the full pathway
  • CYSTSYN-PWY, L-cysteine biosynthesis I:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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