Difference between revisions of "THYMIDYLATESYN-RXN"

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(Created page with "Category:reaction == Reaction AMINEPHEN-RXN == * common-name: ** primary amine oxidase * ec-number: ** [http://enzyme.expasy.org/EC/1.4.3.21 ec-1.4.3.21] * direction: ** l...")
(Created page with "Category:reaction == Reaction SPONTPRO-RXN == * direction: ** reversible == Reaction formula == * 1 L-DELTA1-PYRROLINE_5-CARBOXYLATE[c] '''+''' 1 PROTON[c] '''+'''...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction AMINEPHEN-RXN ==
+
== Reaction SPONTPRO-RXN ==
−
* common-name:
 
−
** primary amine oxidase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/1.4.3.21 ec-1.4.3.21]
 
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PHENYLETHYLAMINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[PHENYLACETALDEHYDE]][c]
+
* 1 [[L-DELTA1-PYRROLINE_5-CARBOXYLATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
== Pathway(s)  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* Gene: [[E_subulatus_14646]]
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* [[ARG-PRO-PWY]], L-arginine degradation VI (arginase 2 pathway):
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** Category: [[annotation]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [[PWY-4981]], L-proline biosynthesis II (from arginine):
−
* Gene: [[E_subulatus_14645]]
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** '''4''' reactions found over '''2''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[PWY-7770]], indolmycin biosynthesis:
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
** '''1''' reactions found over '''10''' reactions in the full pathway
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* Gene: [[E_subulatus_19483]]
+
* [[PWY-6853]], ethene biosynthesis II (microbes):
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** Category: [[annotation]]
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** '''2''' reactions found over '''5''' reactions in the full pathway
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
* [[PWY-6922]], L-N&delta;-acetylornithine biosynthesis:
−
* Gene: [[E_subulatus_14644]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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** Category: [[annotation]]
+
* [[PROSYN-PWY]], L-proline biosynthesis I (from L-glutamate):
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* Gene: [[E_subulatus_11639]]
+
* [[CITRULBIO-PWY]], L-citrulline biosynthesis:
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** Category: [[annotation]]
+
** '''8''' reactions found over '''8''' reactions in the full pathway
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
* [[PWY-6344]], L-arginine degradation XIV (oxidative Stickland reaction):
−
* Gene: [[E_subulatus_19482]]
+
** '''3''' reactions found over '''6''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[PWY-3341]], L-proline biosynthesis III (from L-ornithine):
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
** '''5''' reactions found over '''3''' reactions in the full pathway
−
** Category: [[orthology]]
+
* [[PROUT-PWY]], L-proline degradation I:
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* Gene: [[E_subulatus_11640]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_13120]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
</div>
 
</div>
−
== Pathway(s)  ==
 
−
* [[2PHENDEG-PWY]], phenylethylamine degradation I:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5751]], phenylethanol biosynthesis:
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[esub_adding_annot_form]]; tool: [[curation]]; comment: annotation
−
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR99897
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25266 25266]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28237 28237]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02613 R02613]
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** [http://www.genome.jp/dbget-bin/www_bget?R03314 R03314]
−
{{#set: common-name=primary amine oxidase}}
+
{{#set: direction=reversible}}
−
{{#set: ec-number=ec-1.4.3.21}}
+
{{#set: nb gene associated=0}}
−
{{#set: direction=left-to-right}}
+
{{#set: nb pathway associated=10}}
−
{{#set: nb gene associated=8}}
+
{{#set: reconstruction category=manual}}
−
{{#set: nb pathway associated=2}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction comment=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction source=esub_adding_annot_form}}
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
 

Revision as of 19:08, 17 March 2021

Reaction SPONTPRO-RXN

  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • ARG-PRO-PWY, L-arginine degradation VI (arginase 2 pathway):
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-4981, L-proline biosynthesis II (from arginine):
    • 4 reactions found over 2 reactions in the full pathway
  • PWY-7770, indolmycin biosynthesis:
    • 1 reactions found over 10 reactions in the full pathway
  • PWY-6853, ethene biosynthesis II (microbes):
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-6922, L-Nδ-acetylornithine biosynthesis:
    • 6 reactions found over 7 reactions in the full pathway
  • PROSYN-PWY, L-proline biosynthesis I (from L-glutamate):
    • 4 reactions found over 4 reactions in the full pathway
  • CITRULBIO-PWY, L-citrulline biosynthesis:
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-6344, L-arginine degradation XIV (oxidative Stickland reaction):
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-3341, L-proline biosynthesis III (from L-ornithine):
    • 5 reactions found over 3 reactions in the full pathway
  • PROUT-PWY, L-proline degradation I:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR99897
  • RHEA:
  • LIGAND-RXN:




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