Difference between revisions of "RXN1G-260"

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(Created page with "Category:reaction == Reaction RXN0-5468 == * common-name: ** peroxiredoxin ** lipid hydroperoxide peroxidase * direction: ** left-to-right == Reaction formula == * 1 Cys...")
(Created page with "Category:reaction == Reaction 6PGLUCONDEHYDROG-RXN == * common-name: ** phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating] ** phosphogluconate dehydrogena...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-5468 ==
+
== Reaction 6PGLUCONDEHYDROG-RXN ==
 
* common-name:
 
* common-name:
−
** peroxiredoxin
+
** phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]
−
** lipid hydroperoxide peroxidase
+
** phosphogluconate dehydrogenase (decarboxylating)
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/1.1.1.351 ec-1.1.1.351]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* synonymous:
 +
** phosphogluconic acid dehydrogenase
 +
** 6-phosphogluconic dehydrogenase
 +
** 6pgd
 +
** 6-phosphogluconic carboxylase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Cys2-Peroxiredoxin-Disulfide]][c] '''+''' 1 [[Red-Thioredoxin]][c] '''=>''' 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[Reduced-Cys2-Peroxiredoxins]][c]
+
* 1 [[CPD-2961]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[RIBULOSE-5P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[E_subulatus_05762]]
−
* Gene: [[E_subulatus_20829]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_18794]]
+
* Gene: [[E_subulatus_02177]]
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_08800]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_18793]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[E_subulatus_18334]]
+
* Gene: [[E_subulatus_20831]]
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_08798]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_08799]]
+
* Gene: [[E_subulatus_09945]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_21611]]
+
* Gene: [[E_subulatus_02178]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_17339]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[P122-PWY]], heterolactic fermentation:
 +
** '''14''' reactions found over '''18''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR123272
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: common-name=lipid hydroperoxide peroxidase|peroxiredoxin}}
+
* METANETX-RXN : MNXR115649
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P14332 P14332]
 +
** [http://www.uniprot.org/uniprot/P31072 P31072]
 +
** [http://www.uniprot.org/uniprot/Q9CDN4 Q9CDN4]
 +
** [http://www.uniprot.org/uniprot/P47506 P47506]
 +
** [http://www.uniprot.org/uniprot/Q9JWS3 Q9JWS3]
 +
** [http://www.uniprot.org/uniprot/P43774 P43774]
 +
** [http://www.uniprot.org/uniprot/P12013 P12013]
 +
** [http://www.uniprot.org/uniprot/P41576 P41576]
 +
** [http://www.uniprot.org/uniprot/P00350 P00350]
 +
** [http://www.uniprot.org/uniprot/P00349 P00349]
 +
** [http://www.uniprot.org/uniprot/P52209 P52209]
 +
** [http://www.uniprot.org/uniprot/P41581 P41581]
 +
** [http://www.uniprot.org/uniprot/P41582 P41582]
 +
** [http://www.uniprot.org/uniprot/Q59275 Q59275]
 +
** [http://www.uniprot.org/uniprot/P41583 P41583]
 +
** [http://www.uniprot.org/uniprot/Q60254 Q60254]
 +
** [http://www.uniprot.org/uniprot/P37754 P37754]
 +
** [http://www.uniprot.org/uniprot/Q59410 Q59410]
 +
** [http://www.uniprot.org/uniprot/P52207 P52207]
 +
** [http://www.uniprot.org/uniprot/P70718 P70718]
 +
** [http://www.uniprot.org/uniprot/Q7M451 Q7M451]
 +
** [http://www.uniprot.org/uniprot/P41572 P41572]
 +
** [http://www.uniprot.org/uniprot/P14062 P14062]
 +
** [http://www.uniprot.org/uniprot/P21577 P21577]
 +
** [http://www.uniprot.org/uniprot/P38720 P38720]
 +
** [http://www.uniprot.org/uniprot/Q40311 Q40311]
 +
** [http://www.uniprot.org/uniprot/P53319 P53319]
 +
** [http://www.uniprot.org/uniprot/O81237 O81237]
 +
** [http://www.uniprot.org/uniprot/O81238 O81238]
 +
** [http://www.uniprot.org/uniprot/O81239 O81239]
 +
** [http://www.uniprot.org/uniprot/O22111 O22111]
 +
** [http://www.uniprot.org/uniprot/Q17761 Q17761]
 +
** [http://www.uniprot.org/uniprot/O32911 O32911]
 +
</div>
 +
{{#set: common-name=phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]|phosphogluconate dehydrogenase (decarboxylating)}}
 +
{{#set: ec-number=ec-1.1.1.351}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=9}}
+
{{#set: synonymous=6-phosphogluconic carboxylase|phosphogluconic acid dehydrogenase|6pgd|6-phosphogluconic dehydrogenase}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb gene associated=5}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Revision as of 19:08, 17 March 2021

Reaction 6PGLUCONDEHYDROG-RXN

  • common-name:
    • phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]
    • phosphogluconate dehydrogenase (decarboxylating)
  • ec-number:
  • direction:
    • left-to-right
  • synonymous:
    • phosphogluconic acid dehydrogenase
    • 6-phosphogluconic dehydrogenase
    • 6pgd
    • 6-phosphogluconic carboxylase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P122-PWY, heterolactic fermentation:
    • 14 reactions found over 18 reactions in the full pathway

Reconstruction information

External links

Property "Common-name" (as page type) with input value "phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.





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