Difference between revisions of "UDP-GLUCURONATE-DECARBOXYLASE-RXN"

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(Created page with "Category:reaction == Reaction GALACTOKIN-RXN == * common-name: ** galactokinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.6 ec-2.7.1.6] * direction: ** reversible...")
(Created page with "Category:reaction == Reaction GLUTAMATE-DEHYDROGENASE-RXN == * common-name: ** glutamate dehydrogenase (nad+) * ec-number: ** [http://enzyme.expasy.org/EC/1.4.1.2 ec-1.4.1...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GALACTOKIN-RXN ==
+
== Reaction GLUTAMATE-DEHYDROGENASE-RXN ==
 
* common-name:
 
* common-name:
−
** galactokinase
+
** glutamate dehydrogenase (nad+)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.1.6 ec-2.7.1.6]
+
** [http://enzyme.expasy.org/EC/1.4.1.2 ec-1.4.1.2]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ALPHA-D-GALACTOSE]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[GALACTOSE-1P]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[GLT]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_15511]]
+
* Gene: [[E_subulatus_22259]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_17368]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[E_subulatus_11918]]
+
* Gene: [[E_subulatus_25172]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_25171]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-3821]], D-galactose detoxification:
+
* [[PWY-6728]], methylaspartate cycle:
 +
** '''12''' reactions found over '''19''' reactions in the full pathway
 +
* [[PWY-5022]], 4-aminobutanoate degradation V:
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate):
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY66-422]]:
+
* [[GLUTAMATE-DEG1-PWY]], L-glutamate degradation I:
−
** '''5''' reactions found over '''n.a''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-6317]], D-galactose degradation I (Leloir pathway):
+
* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''5''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-6527]], stachyose degradation:
+
* [[PWY-7126]], ethene biosynthesis IV (engineered):
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR99985
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR100085
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13556 13556]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15136 15136]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01092 R01092]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00243 R00243]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P09608 P09608]
+
** [http://www.uniprot.org/uniprot/P20016 P20016]
−
** [http://www.uniprot.org/uniprot/Q01415 Q01415]
+
** [http://www.uniprot.org/uniprot/P28997 P28997]
−
** [http://www.uniprot.org/uniprot/P22713 P22713]
+
** [http://www.uniprot.org/uniprot/P41755 P41755]
−
** [http://www.uniprot.org/uniprot/P31767 P31767]
+
** [http://www.uniprot.org/uniprot/Q9JTP6 Q9JTP6]
−
** [http://www.uniprot.org/uniprot/Q8X7P4 Q8X7P4]
+
** [http://www.uniprot.org/uniprot/P00365 P00365]
−
** [http://www.uniprot.org/uniprot/Q9R7D7 Q9R7D7]
+
** [http://www.uniprot.org/uniprot/P93541 P93541]
−
** [http://www.uniprot.org/uniprot/P96993 P96993]
+
** [http://www.uniprot.org/uniprot/P80319 P80319]
−
** [http://www.uniprot.org/uniprot/P04385 P04385]
+
** [http://www.uniprot.org/uniprot/P24295 P24295]
−
** [http://www.uniprot.org/uniprot/P0A6T3 P0A6T3]
+
** [http://www.uniprot.org/uniprot/P27346 P27346]
−
** [http://www.uniprot.org/uniprot/P13227 P13227]
+
** [http://www.uniprot.org/uniprot/P33327 P33327]
−
** [http://www.uniprot.org/uniprot/P39574 P39574]
+
** [http://www.uniprot.org/uniprot/Q43260 Q43260]
−
** [http://www.uniprot.org/uniprot/P13045 P13045]
+
** [http://www.uniprot.org/uniprot/O04937 O04937]
−
** [http://www.uniprot.org/uniprot/Q9SEE5 Q9SEE5]
+
** [http://www.uniprot.org/uniprot/Q25415 Q25415]
−
{{#set: common-name=galactokinase}}
+
** [http://www.uniprot.org/uniprot/O74024 O74024]
−
{{#set: ec-number=ec-2.7.1.6}}
+
** [http://www.uniprot.org/uniprot/O59650 O59650]
−
{{#set: direction=reversible}}
+
</div>
−
{{#set: nb gene associated=2}}
+
{{#set: common-name=glutamate dehydrogenase (nad+)}}
−
{{#set: nb pathway associated=4}}
+
{{#set: ec-number=ec-1.4.1.2}}
 +
{{#set: direction=left-to-right}}
 +
{{#set: nb gene associated=4}}
 +
{{#set: nb pathway associated=6}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
 
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Revision as of 19:08, 17 March 2021

Reaction GLUTAMATE-DEHYDROGENASE-RXN

  • common-name:
    • glutamate dehydrogenase (nad+)
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6728, methylaspartate cycle:
    • 12 reactions found over 19 reactions in the full pathway
  • PWY-5022, 4-aminobutanoate degradation V:
    • 2 reactions found over 7 reactions in the full pathway
  • ALACAT2-PWY, L-alanine degradation II (to D-lactate):
    • 3 reactions found over 3 reactions in the full pathway
  • GLUTAMATE-DEG1-PWY, L-glutamate degradation I:
    • 1 reactions found over 1 reactions in the full pathway
  • P162-PWY, L-glutamate degradation V (via hydroxyglutarate):
    • 5 reactions found over 10 reactions in the full pathway
  • PWY-7126, ethene biosynthesis IV (engineered):
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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