Difference between revisions of "ExchangeSeed-CPD-315"

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(Created page with "Category:reaction == Reaction 3-DEHYDROQUINATE-DEHYDRATASE-RXN == * common-name: ** 3-dehydroquinate dehydratase * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.10 ec-4...")
(Created page with "Category:reaction == Reaction 2.5.1.32-RXN == * direction: ** left-to-right * synonymous: ** psase ** geranylgeranyl-diphosphate geranylgeranyltransferase == Reaction form...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3-DEHYDROQUINATE-DEHYDRATASE-RXN ==
+
== Reaction 2.5.1.32-RXN ==
−
* common-name:
 
−
** 3-dehydroquinate dehydratase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/4.2.1.10 ec-4.2.1.10]
 
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* synonymous:
 +
** psase
 +
** geranylgeranyl-diphosphate geranylgeranyltransferase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DEHYDROQUINATE]][c] '''<=>''' 1 [[3-DEHYDRO-SHIKIMATE]][c] '''+''' 1 [[WATER]][c]
+
* 2 [[GERANYLGERANYL-PP]][c] '''=>''' 1 [[CPD-464]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_17155]]
+
* Gene: [[E_subulatus_18355]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_01962]]
 
−
** Category: [[orthology]]
 
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*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[E_subulatus_21777]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
+
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
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** '''6''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-6707]], gallate biosynthesis:
+
* [[PWY-6287]], neurosporene biosynthesis:
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6416]], quinate degradation II:
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* [[PWY-7943]], lycopadiene biosynthesis:
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** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''7''' reactions in the full pathway
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* [[QUINATEDEG-PWY]], quinate degradation I:
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR102655
−
* METANETX-RXN : MNXR97449
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21099 21099]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22297 22297]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03084 R03084]
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** [http://www.genome.jp/dbget-bin/www_bget?R02065 R02065]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P05195 P05195]
+
** [http://www.uniprot.org/uniprot/P53609 P53609]
−
** [http://www.uniprot.org/uniprot/P46380 P46380]
+
** [http://www.uniprot.org/uniprot/P37295 P37295]
−
** [http://www.uniprot.org/uniprot/Q9CF39 Q9CF39]
+
** [http://www.uniprot.org/uniprot/P22872 P22872]
−
** [http://www.uniprot.org/uniprot/P07547 P07547]
+
** [http://www.uniprot.org/uniprot/P53610 P53610]
−
** [http://www.uniprot.org/uniprot/P08566 P08566]
+
** [http://www.uniprot.org/uniprot/P53612 P53612]
−
** [http://www.uniprot.org/uniprot/P43878 P43878]
+
** [http://www.uniprot.org/uniprot/P17056 P17056]
−
** [http://www.uniprot.org/uniprot/P05194 P05194]
+
** [http://www.uniprot.org/uniprot/P49293 P49293]
−
** [http://www.uniprot.org/uniprot/Q58849 Q58849]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P0A4Z6 P0A4Z6]
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{{#set: synonymous=psase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
−
** [http://www.uniprot.org/uniprot/Q9PJ53 Q9PJ53]
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{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/P05147 P05147]
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{{#set: nb pathway associated=3}}
−
** [http://www.uniprot.org/uniprot/P24670 P24670]
+
{{#set: reconstruction category=annotation}}
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** [http://www.uniprot.org/uniprot/P35146 P35146]
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{{#set: reconstruction tool=pathwaytools}}
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** [http://www.uniprot.org/uniprot/Q42947 Q42947]
 
−
** [http://www.uniprot.org/uniprot/Q48255 Q48255]
 
−
** [http://www.uniprot.org/uniprot/P73367 P73367]
 
−
** [http://www.uniprot.org/uniprot/O65917 O65917]
 
−
</div>
 
−
{{#set: common-name=3-dehydroquinate dehydratase}}
 
−
{{#set: ec-number=ec-4.2.1.10}}
 
−
{{#set: direction=reversible}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=4}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
+
{{#set: reconstruction source=ectocarpus_subulatus}}

Revision as of 19:08, 17 March 2021

Reaction 2.5.1.32-RXN

  • direction:
    • left-to-right
  • synonymous:
    • psase
    • geranylgeranyl-diphosphate geranylgeranyltransferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6475, trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-6287, neurosporene biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7943, lycopadiene biosynthesis:
    • 1 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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