Difference between revisions of "RXN-12398"

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(Created page with "Category:reaction == Reaction RXN-1404 == * ec-number: ** [http://enzyme.expasy.org/EC/3.5.5.1 ec-3.5.5.1] * direction: ** left-to-right == Reaction formula == * 1 INDOL...")
(Created page with "Category:reaction == Reaction RXN-12398 == * common-name: ** xyloglucan xxlg oligosaccharide β-galactosidase ** beta-galactosidase ** xxlg xyloglucan oligosaccharide...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-1404 ==
+
== Reaction RXN-12398 ==
 +
* common-name:
 +
** xyloglucan xxlg oligosaccharide β-galactosidase
 +
** beta-galactosidase
 +
** xxlg xyloglucan oligosaccharide β-galactosidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.5.1 ec-3.5.5.1]
+
** [http://enzyme.expasy.org/EC/3.2.1.23 ec-3.2.1.23]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[INDOLEYL-CPD]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[INDOLE_ACETATE_AUXIN]][c]
+
* 1 [[CPD-13376]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-13375]][c] '''+''' 1 [[D-galactopyranose]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_21609]]
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* Gene: [[E_subulatus_18607]]
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** Category: [[orthology]]
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** Category: [[annotation]]
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*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_00876]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_00877]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_14853]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_07881]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_14852]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* [[PWY-6807]], xyloglucan degradation II (exoglucanase):
−
** '''1''' reactions found over '''14''' reactions in the full pathway
+
** '''3''' reactions found over '''8''' reactions in the full pathway
−
** '''1''' reactions found over '''14''' reactions in the full pathway
 
−
** '''2''' reactions found over '''14''' reactions in the full pathway
 
−
** '''2''' reactions found over '''14''' reactions in the full pathway
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* DB : LIGAND-RXN
+
* METANETX-RXN : MNXR117526
−
* ID : R03093
+
{{#set: common-name=xxlg xyloglucan oligosaccharide β-galactosidase|beta-galactosidase|xyloglucan xxlg oligosaccharide β-galactosidase}}
−
{{#set: ec-number=ec-3.5.5.1}}
+
{{#set: ec-number=ec-3.2.1.23}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=6}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem}}
+
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:37, 17 March 2021

Reaction RXN-12398

  • common-name:
    • xyloglucan xxlg oligosaccharide β-galactosidase
    • beta-galactosidase
    • xxlg xyloglucan oligosaccharide β-galactosidase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6807, xyloglucan degradation II (exoglucanase):
    • 3 reactions found over 8 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR117526





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