Difference between revisions of "RXNARA-8002"

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(Created page with "Category:reaction == Reaction DCTP-PYROPHOSPHATASE-RXN == * common-name: ** dctp pyrophosphohydrolase * ec-number: ** [http://enzyme.expasy.org/EC/3.6.1.9 ec-3.6.1.9] ** [...")
(Created page with "Category:reaction == Reaction RXNARA-8002 == * direction: ** left-to-right * synonymous: ** psase ** geranylgeranyl-diphosphate geranylgeranyltransferase ** prephytoene-di...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DCTP-PYROPHOSPHATASE-RXN ==
+
== Reaction RXNARA-8002 ==
−
* common-name:
 
−
** dctp pyrophosphohydrolase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/3.6.1.9 ec-3.6.1.9]
 
−
** [http://enzyme.expasy.org/EC/3.6.1.12 ec-3.6.1.12]
 
−
** [http://enzyme.expasy.org/EC/3.6.1.65 ec-3.6.1.65]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* synonymous:
 +
** psase
 +
** geranylgeranyl-diphosphate geranylgeranyltransferase
 +
** prephytoene-diphosphate synthase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DCTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DCMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CPD-464]][c] '''=>''' 1 [[CPD-12321]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[E_subulatus_18355]]
−
* Gene: [[E_subulatus_16055]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_01318]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_16056]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_02580]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_16054]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_16057]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_16985]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7206]], pyrimidine deoxyribonucleotides dephosphorylation:
+
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6287]], neurosporene biosynthesis:
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5942]], trans-lycopene biosynthesis I:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR97203
+
* METANETX-RXN : MNXR108741
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22637 22637]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34480 34480]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01668 R01668]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07270 R07270]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P39262 P39262]
 
−
{{#set: common-name=dctp pyrophosphohydrolase}}
 
−
{{#set: ec-number=ec-3.6.1.65|ec-3.6.1.12|ec-3.6.1.9}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=7}}
+
{{#set: synonymous=psase|geranylgeranyl-diphosphate geranylgeranyltransferase|prephytoene-diphosphate synthase}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:37, 17 March 2021

Reaction RXNARA-8002

  • direction:
    • left-to-right
  • synonymous:
    • psase
    • geranylgeranyl-diphosphate geranylgeranyltransferase
    • prephytoene-diphosphate synthase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6475, trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-6287, neurosporene biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5942, trans-lycopene biosynthesis I:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR108741
  • RHEA:
  • LIGAND-RXN:





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