Difference between revisions of "RXNARA-8002"
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(Created page with "Category:reaction == Reaction RXN-13449 == * common-name: ** short-chain acyl-coa dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.3.8.1 ec-1.3.8.1] * directio...") |
(Created page with "Category:reaction == Reaction RXNARA-8002 == * direction: ** left-to-right * synonymous: ** psase ** geranylgeranyl-diphosphate geranylgeranyltransferase ** prephytoene-di...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction | + | == Reaction RXNARA-8002 == |
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* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
| + | * synonymous: | ||
| + | ** psase | ||
| + | ** geranylgeranyl-diphosphate geranylgeranyltransferase | ||
| + | ** prephytoene-diphosphate synthase | ||
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[CPD-464]][c] '''=>''' 1 [[CPD-12321]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[E_subulatus_18355]] |
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** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| + | * [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria): | ||
| + | ** '''2''' reactions found over '''8''' reactions in the full pathway | ||
| + | * [[PWY-6287]], neurosporene biosynthesis: | ||
| + | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
| + | * [[PWY-5942]], trans-lycopene biosynthesis I: | ||
| + | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
| − | * METANETX-RXN : | + | * METANETX-RXN : MNXR108741 |
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34480 34480] |
| − | + | * LIGAND-RXN: | |
| − | + | ** [http://www.genome.jp/dbget-bin/www_bget?R07270 R07270] | |
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
| − | {{#set: nb gene associated= | + | {{#set: synonymous=psase|geranylgeranyl-diphosphate geranylgeranyltransferase|prephytoene-diphosphate synthase}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb gene associated=1}} |
| + | {{#set: nb pathway associated=3}} | ||
{{#set: reconstruction category=annotation}} | {{#set: reconstruction category=annotation}} | ||
{{#set: reconstruction tool=pathwaytools}} | {{#set: reconstruction tool=pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
{{#set: reconstruction source=ectocarpus_subulatus}} | {{#set: reconstruction source=ectocarpus_subulatus}} | ||
Latest revision as of 19:37, 17 March 2021
Contents
Reaction RXNARA-8002
- direction:
- left-to-right
- synonymous:
- psase
- geranylgeranyl-diphosphate geranylgeranyltransferase
- prephytoene-diphosphate synthase
Reaction formula
Gene(s) associated with this reaction
- Gene: E_subulatus_18355
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6475, trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
- 2 reactions found over 8 reactions in the full pathway
- PWY-6287, neurosporene biosynthesis:
- 2 reactions found over 5 reactions in the full pathway
- PWY-5942, trans-lycopene biosynthesis I:
- 2 reactions found over 2 reactions in the full pathway
Reconstruction information
- category: annotation; source: ectocarpus_subulatus; tool: pathwaytools; comment: n.a
External links
