Difference between revisions of "PYRIMSYN3-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction 1.8.5.1-RXN == * common-name: ** dehydroascorbate reductase * ec-number: ** [http://enzyme.expasy.org/EC/1.8.5.1 ec-1.8.5.1] * direction: **...")
(Created page with "Category:reaction == Reaction PYRIMSYN3-RXN == * common-name: ** phosphomethylpyrimidine kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.7 ec-2.7.4.7] * directio...")
 
(2 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 1.8.5.1-RXN ==
+
== Reaction PYRIMSYN3-RXN ==
 
* common-name:
 
* common-name:
−
** dehydroascorbate reductase
+
** phosphomethylpyrimidine kinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.8.5.1 ec-1.8.5.1]
+
** [http://enzyme.expasy.org/EC/2.7.4.7 ec-2.7.4.7]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[GLUTATHIONE]][c] '''+''' 1 [[L-DEHYDRO-ASCORBATE]][c] '''=>''' 1 [[ASCORBATE]][c] '''+''' 1 [[OXIDIZED-GLUTATHIONE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[AMINO-HYDROXYMETHYL-METHYL-PYR-P]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_01219]]
+
* Gene: [[E_subulatus_05008]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_15843]]
+
* Gene: [[E_subulatus_05007]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_15842]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_05009]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_15841]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_17354]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* [[PWY-6890]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis I:
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis II:
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7357]], thiamine phosphate formation from pyrithiamine and oxythiamine (yeast):
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6910]], hydroxymethylpyrimidine salvage:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7356]], thiamine diphosphate salvage IV (yeast):
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* DB : LIGAND-RXN
+
* METANETX-RXN : MNXR103045
−
* ID : R01108
+
* RHEA:
−
{{#set: common-name=dehydroascorbate reductase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19894 19894]
−
{{#set: ec-number=ec-1.8.5.1}}
+
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04509 R04509]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9JTE1 Q9JTE1]
 +
** [http://www.uniprot.org/uniprot/Q9PNL2 Q9PNL2]
 +
** [http://www.uniprot.org/uniprot/Q9CI79 Q9CI79]
 +
** [http://www.uniprot.org/uniprot/Q9CG47 Q9CG47]
 +
{{#set: common-name=phosphomethylpyrimidine kinase}}
 +
{{#set: ec-number=ec-2.7.4.7}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=5}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Latest revision as of 19:37, 17 March 2021

Reaction PYRIMSYN3-RXN

  • common-name:
    • phosphomethylpyrimidine kinase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6890, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis I:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7282, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis II:
    • 6 reactions found over 10 reactions in the full pathway
  • PWY-7357, thiamine phosphate formation from pyrithiamine and oxythiamine (yeast):
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-6910, hydroxymethylpyrimidine salvage:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7356, thiamine diphosphate salvage IV (yeast):
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//esubgem/index.php?title=PYRIMSYN3-RXN&oldid=50491"