Difference between revisions of "PYRIMSYN3-RXN"

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(Created page with "Category:reaction == Reaction CARBONYL-REDUCTASE-NADPH-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.184 ec-1.1.1.184] * direction: ** reversible == Reaction f...")
(Created page with "Category:reaction == Reaction PYRIMSYN3-RXN == * common-name: ** phosphomethylpyrimidine kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.7 ec-2.7.4.7] * directio...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction CARBONYL-REDUCTASE-NADPH-RXN ==
+
== Reaction PYRIMSYN3-RXN ==
 +
* common-name:
 +
** phosphomethylpyrimidine kinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.184 ec-1.1.1.184]
+
** [http://enzyme.expasy.org/EC/2.7.4.7 ec-2.7.4.7]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NADP]][c] '''+''' 1 [[Secondary-Alcohols]][c] '''<=>''' 1 [[LONG-CHAIN-KETONE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[AMINO-HYDROXYMETHYL-METHYL-PYR-P]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_23749]]
+
* Gene: [[E_subulatus_05008]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_05007]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_05009]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6890]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis I:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis II:
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7357]], thiamine phosphate formation from pyrithiamine and oxythiamine (yeast):
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6910]], hydroxymethylpyrimidine salvage:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7356]], thiamine diphosphate salvage IV (yeast):
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR108249
+
* METANETX-RXN : MNXR103045
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19257 19257]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19894 19894]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03557 R03557]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04509 R04509]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P08074 P08074]
+
** [http://www.uniprot.org/uniprot/Q9JTE1 Q9JTE1]
−
** [http://www.uniprot.org/uniprot/P17264 P17264]
+
** [http://www.uniprot.org/uniprot/Q9PNL2 Q9PNL2]
−
** [http://www.uniprot.org/uniprot/P47727 P47727]
+
** [http://www.uniprot.org/uniprot/Q9CI79 Q9CI79]
−
** [http://www.uniprot.org/uniprot/O08559 O08559]
+
** [http://www.uniprot.org/uniprot/Q9CG47 Q9CG47]
−
** [http://www.uniprot.org/uniprot/Q9ZFY9 Q9ZFY9]
+
{{#set: common-name=phosphomethylpyrimidine kinase}}
−
** [http://www.uniprot.org/uniprot/Q9C4B3 Q9C4B3]
+
{{#set: ec-number=ec-2.7.4.7}}
−
** [http://www.uniprot.org/uniprot/Q29529 Q29529]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P16152 P16152]
+
{{#set: nb gene associated=3}}
−
** [http://www.uniprot.org/uniprot/Q7M4W0 Q7M4W0]
+
{{#set: nb pathway associated=5}}
−
** [http://www.uniprot.org/uniprot/Q7LZH9 Q7LZH9]
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: ec-number=ec-1.1.1.184}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: direction=reversible}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=0}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Latest revision as of 19:37, 17 March 2021

Reaction PYRIMSYN3-RXN

  • common-name:
    • phosphomethylpyrimidine kinase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6890, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis I:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7282, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis II:
    • 6 reactions found over 10 reactions in the full pathway
  • PWY-7357, thiamine phosphate formation from pyrithiamine and oxythiamine (yeast):
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-6910, hydroxymethylpyrimidine salvage:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7356, thiamine diphosphate salvage IV (yeast):
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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