Difference between revisions of "TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN"

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(Created page with "Category:reaction == Reaction F16ALDOLASE-RXN == * common-name: ** fructose-bisphosphate aldolase * ec-number: ** [http://enzyme.expasy.org/EC/4.1.2.13 ec-4.1.2.13] * dire...")
 
(Created page with "Category:reaction == Reaction TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN == * common-name: ** trna pseudouridine38-40 synthase * ec-number: ** [http://enzyme.expasy.org/EC/5.4.99.1...")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction F16ALDOLASE-RXN ==
+
== Reaction TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN ==
 
* common-name:
 
* common-name:
−
** fructose-bisphosphate aldolase
+
** trna pseudouridine38-40 synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.2.13 ec-4.1.2.13]
+
** [http://enzyme.expasy.org/EC/5.4.99.12 ec-5.4.99.12]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''<=>''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c] '''+''' 1 [[GAP]][c]
+
* 1 [[tRNA-uridine-38-40]][c] '''=>''' 1 [[tRNA-pseudouridine-38-40]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[E_subulatus_15858]]
+
* Gene: [[E_subulatus_22422]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_09282]]
+
* Gene: [[E_subulatus_17814]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_20714]]
+
* Gene: [[E_subulatus_24162]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_15857]]
+
* Gene: [[E_subulatus_03300]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_17135]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_24163]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_03224]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_17136]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_24161]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_09285]]
+
* Gene: [[E_subulatus_10143]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_09284]]
+
* Gene: [[E_subulatus_17904]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_09283]]
+
* Gene: [[E_subulatus_17813]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_09281]]
+
* Gene: [[E_subulatus_14954]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_04830]]
+
* Gene: [[E_subulatus_22423]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
** '''11''' reactions found over '''10''' reactions in the full pathway
 
−
** '''11''' reactions found over '''10''' reactions in the full pathway
 
−
** '''11''' reactions found over '''11''' reactions in the full pathway
 
−
** '''11''' reactions found over '''11''' reactions in the full pathway
 
−
** '''12''' reactions found over '''12''' reactions in the full pathway
 
−
** '''12''' reactions found over '''12''' reactions in the full pathway
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
** '''13''' reactions found over '''13''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* DB : RHEA
+
* METANETX-RXN : MNXR124072
−
* ID : 14729
+
* RHEA:
−
{{#set: common-name=fructose-bisphosphate aldolase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22377 22377]
−
{{#set: ec-number=ec-4.1.2.13}}
+
* LIGAND-RXN:
−
{{#set: direction=reversible}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03020 R03020]
−
{{#set: nb gene associated=9}}
+
* UNIPROT:
−
{{#set: nb pathway associated=13}}
+
** [http://www.uniprot.org/uniprot/Q59069 Q59069]
 +
** [http://www.uniprot.org/uniprot/P47428 P47428]
 +
** [http://www.uniprot.org/uniprot/P45291 P45291]
 +
** [http://www.uniprot.org/uniprot/Q45557 Q45557]
 +
** [http://www.uniprot.org/uniprot/Q50291 Q50291]
 +
** [http://www.uniprot.org/uniprot/P53167 P53167]
 +
** [http://www.uniprot.org/uniprot/Q12211 Q12211]
 +
** [http://www.uniprot.org/uniprot/P73295 P73295]
 +
** [http://www.uniprot.org/uniprot/P07649 P07649]
 +
{{#set: common-name=trna pseudouridine38-40 synthase}}
 +
{{#set: ec-number=ec-5.4.99.12}}
 +
{{#set: direction=left-to-right}}
 +
{{#set: nb gene associated=14}}
 +
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:38, 17 March 2021

Reaction TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN

  • common-name:
    • trna pseudouridine38-40 synthase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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