Difference between revisions of "3.1.4.17-RXN"

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(Created page with "Category:reaction == Reaction QUINOPRIBOTRANS-RXN == * common-name: ** nicotinate-nucleotide diphosphorylase (carboxylating) ** quinolinate phosphoribosyltransferase (deca...")
(Created page with "Category:reaction == Reaction 3.1.4.17-RXN == * common-name: ** 3',5'-cyclic-nucleotide phosphodiesterase * ec-number: ** [http://enzyme.expasy.org/EC/3.1.4.17 ec-3.1.4.17...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction QUINOPRIBOTRANS-RXN ==
+
== Reaction 3.1.4.17-RXN ==
 
* common-name:
 
* common-name:
−
** nicotinate-nucleotide diphosphorylase (carboxylating)
+
** 3',5'-cyclic-nucleotide phosphodiesterase
−
** quinolinate phosphoribosyltransferase (decarboxylating)
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.2.19 ec-2.4.2.19]
+
** [http://enzyme.expasy.org/EC/3.1.4.17 ec-3.1.4.17]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[PROTON]][c] '''+''' 1 [[PRPP]][c] '''+''' 1 [[QUINOLINATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NICOTINATE_NUCLEOTIDE]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[Cyclic-3-5-Nucleoside-Monophosphates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Nucleoside-Monophosphates]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_10473]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[E_subulatus_21787]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_03659]]
+
* Gene: [[E_subulatus_07900]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[E_subulatus_11674]]
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
−
* Gene: [[E_subulatus_22807]]
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_23995]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_21788]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_06472]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_21786]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_21791]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_07899]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_23994]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_11673]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PYRIDNUCSYN-PWY]], NAD de novo biosynthesis I (from aspartate):
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7342]], superpathway of nicotine biosynthesis:
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5653]], NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde:
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5316]], nicotine biosynthesis:
 
−
** '''3''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR101980
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR115300
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12735 12735]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14654 14654]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03348 R03348]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03259 R03259]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9JSX8 Q9JSX8]
+
** [http://www.uniprot.org/uniprot/P12019 P12019]
−
** [http://www.uniprot.org/uniprot/Q57916 Q57916]
+
** [http://www.uniprot.org/uniprot/Q56686 Q56686]
−
** [http://www.uniprot.org/uniprot/P30011 P30011]
+
** [http://www.uniprot.org/uniprot/P14099 P14099]
−
** [http://www.uniprot.org/uniprot/P46714 P46714]
+
** [http://www.uniprot.org/uniprot/Q01066 Q01066]
−
** [http://www.uniprot.org/uniprot/Q15274 Q15274]
+
** [http://www.uniprot.org/uniprot/Q01061 Q01061]
−
** [http://www.uniprot.org/uniprot/P77938 P77938]
+
** [http://www.uniprot.org/uniprot/P14100 P14100]
−
{{#set: common-name=nicotinate-nucleotide diphosphorylase (carboxylating)|quinolinate phosphoribosyltransferase (decarboxylating)}}
+
** [http://www.uniprot.org/uniprot/Q01065 Q01065]
−
{{#set: ec-number=ec-2.4.2.19}}
+
** [http://www.uniprot.org/uniprot/P27815 P27815]
 +
** [http://www.uniprot.org/uniprot/O66909 O66909]
 +
** [http://www.uniprot.org/uniprot/P14270 P14270]
 +
** [http://www.uniprot.org/uniprot/O27755 O27755]
 +
** [http://www.uniprot.org/uniprot/P44685 P44685]
 +
** [http://www.uniprot.org/uniprot/P22434 P22434]
 +
** [http://www.uniprot.org/uniprot/P0AEW4 P0AEW4]
 +
** [http://www.uniprot.org/uniprot/O26280 O26280]
 +
** [http://www.uniprot.org/uniprot/O06629 O06629]
 +
** [http://www.uniprot.org/uniprot/O30241 O30241]
 +
** [http://www.uniprot.org/uniprot/P14644 P14644]
 +
** [http://www.uniprot.org/uniprot/P54748 P54748]
 +
** [http://www.uniprot.org/uniprot/Q13945 Q13945]
 +
** [http://www.uniprot.org/uniprot/Q01062 Q01062]
 +
** [http://www.uniprot.org/uniprot/P54827 P54827]
 +
** [http://www.uniprot.org/uniprot/Q01064 Q01064]
 +
** [http://www.uniprot.org/uniprot/Q9NP56 Q9NP56]
 +
** [http://www.uniprot.org/uniprot/O60658 O60658]
 +
** [http://www.uniprot.org/uniprot/P36599 P36599]
 +
** [http://www.uniprot.org/uniprot/P30645 P30645]
 +
** [http://www.uniprot.org/uniprot/Q45859 Q45859]
 +
** [http://www.uniprot.org/uniprot/P12252 P12252]
 +
** [http://www.uniprot.org/uniprot/P06776 P06776]
 +
** [http://www.uniprot.org/uniprot/Q08493 Q08493]
 +
** [http://www.uniprot.org/uniprot/Q63421 Q63421]
 +
</div>
 +
{{#set: common-name=3',5'-cyclic-nucleotide phosphodiesterase}}
 +
{{#set: ec-number=ec-3.1.4.17}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=11}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
+
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:38, 17 March 2021

Reaction 3.1.4.17-RXN

  • common-name:
    • 3',5'-cyclic-nucleotide phosphodiesterase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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