Difference between revisions of "RXN-9516"
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(Created page with "Category:reaction == Reaction RXN-969 == * common-name: ** glycolate oxidase * ec-number: ** [http://enzyme.expasy.org/EC/1.1.3.15 ec-1.1.3.15] * direction: ** left-to-rig...") |
(Created page with "Category:reaction == Reaction RXN-9516 == * common-name: ** 3-oxo-hexanoyl-[acyl-carrier protein] synthase ** β-ketohexanoyl-[acp] synthase ** 3-oxoacyl-[acyl-carrier...") |
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(One intermediate revision by one other user not shown) | |||
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN- | + | == Reaction RXN-9516 == |
* common-name: | * common-name: | ||
− | ** | + | ** 3-oxo-hexanoyl-[acyl-carrier protein] synthase |
+ | ** β-ketohexanoyl-[acp] synthase | ||
+ | ** 3-oxoacyl-[acyl-carrier-protein] synthase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/1.1.3. | + | ** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179] |
+ | ** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41] | ||
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[Butanoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-hexanoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * Gene: [[ | + | * Gene: [[E_subulatus_13004]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[E_subulatus_08948]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | ** Category: [[orthology]] |
+ | *** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[E_subulatus_22265]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[E_subulatus_22266]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[E_subulatus_13005]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | |||
− | |||
− | |||
− | |||
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[E_subulatus_13006]] |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
</div> | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): |
− | ** ''' | + | ** '''9''' reactions found over '''11''' reactions in the full pathway |
+ | * [[PWY-5971]], palmitate biosynthesis (type II fatty acid synthase): | ||
+ | ** '''30''' reactions found over '''31''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
− | |||
− | |||
− | |||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R04952 R04952] |
− | {{#set: common-name= | + | * METANETX-RXN : MNXR109245 |
− | {{#set: ec-number=ec-1. | + | {{#set: common-name=β-ketohexanoyl-[acp] synthase|3-oxoacyl-[acyl-carrier-protein] synthase|3-oxo-hexanoyl-[acyl-carrier protein] synthase}} |
+ | {{#set: ec-number=ec-2.3.1.179|ec-2.3.1.41}} | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=6}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=2}} |
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}} | {{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}} |
Latest revision as of 19:38, 17 March 2021
Contents
Reaction RXN-9516
- common-name:
- 3-oxo-hexanoyl-[acyl-carrier protein] synthase
- β-ketohexanoyl-[acp] synthase
- 3-oxoacyl-[acyl-carrier-protein] synthase
- ec-number:
- direction:
- left-to-right
Reaction formula
- 1 Butanoyl-ACPs[c] + 1 MALONYL-ACP[c] + 1 PROTON[c] => 1 3-oxo-hexanoyl-ACPs[c] + 1 ACP[c] + 1 CARBON-DIOXIDE[c]
Gene(s) associated with this reaction
- Gene: E_subulatus_13004
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: E_subulatus_08948
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_a.taliana.aragem, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_a.taliana.aragem, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: E_subulatus_22265
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: E_subulatus_22266
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: E_subulatus_13005
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_a.taliana.aragem, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_a.taliana.aragem, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: E_subulatus_13006
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7388, octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast):
- 9 reactions found over 11 reactions in the full pathway
- PWY-5971, palmitate biosynthesis (type II fatty acid synthase):
- 30 reactions found over 31 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_a.taliana.aragem; tool: pantograph; comment: n.a
- category: annotation; source: ectocarpus_subulatus; tool: pathwaytools; comment: n.a
External links
- LIGAND-RXN:
- METANETX-RXN : MNXR109245
- Property "Common-name" (as page type) with input value "β-ketohexanoyl-[acp] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
- Property "Common-name" (as page type) with input value "3-oxoacyl-[acyl-carrier-protein] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
- Property "Common-name" (as page type) with input value "3-oxo-hexanoyl-[acyl-carrier protein] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.