Difference between revisions of "UROGENDECARBOX-RXN"

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(Created page with "Category:reaction == Reaction RXN-9635 == * common-name: ** trans-octadec-2-enoyl-[acyl-carrier-protein] reductase ** steroyl-[acp] reductase * ec-number: ** [http://enzym...")
(Created page with "Category:reaction == Reaction UROGENDECARBOX-RXN == * common-name: ** uroporphyrinogen decarboxylase * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.37 ec-4.1.1.37] * d...")
 
(2 intermediate revisions by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9635 ==
+
== Reaction UROGENDECARBOX-RXN ==
 
* common-name:
 
* common-name:
−
** trans-octadec-2-enoyl-[acyl-carrier-protein] reductase
+
** uroporphyrinogen decarboxylase
−
** steroyl-[acp] reductase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.1.9 ec-1.3.1.9]
+
** [http://enzyme.expasy.org/EC/4.1.1.37 ec-4.1.1.37]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NADH]][c] '''+''' 1 [[Octadec-2-enoyl-ACPs]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[Stearoyl-ACPs]][c]
+
* 4 [[PROTON]][c] '''+''' 1 [[UROPORPHYRINOGEN-III]][c] '''=>''' 4 [[CARBON-DIOXIDE]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[E_subulatus_19237]]
−
* Gene: [[E_subulatus_16466]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[E_subulatus_19239]]
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[E_subulatus_16467]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_16468]]
+
* Gene: [[E_subulatus_19238]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_18097]]
+
* Gene: [[E_subulatus_09205]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_16469]]
+
* Gene: [[E_subulatus_19236]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_24601]]
+
* Gene: [[E_subulatus_19235]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* [[PWY-7766]], heme b biosynthesis IV (Gram-positive bacteria):
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[HEMESYN2-PWY]], heme b biosynthesis II (oxygen-independent):
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic):
 +
** '''3''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III:
 +
** '''5''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic):
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: common-name=steroyl-[acp] reductase|trans-octadec-2-enoyl-[acyl-carrier-protein] reductase}}
+
* METANETX-RXN : MNXR105140
−
{{#set: ec-number=ec-1.3.1.9}}
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19866 19866]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03197 R03197]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P06132 P06132]
 +
** [http://www.uniprot.org/uniprot/P16891 P16891]
 +
** [http://www.uniprot.org/uniprot/P32395 P32395]
 +
** [http://www.uniprot.org/uniprot/Q9PN54 Q9PN54]
 +
** [http://www.uniprot.org/uniprot/Q9JV52 Q9JV52]
 +
** [http://www.uniprot.org/uniprot/P29680 P29680]
 +
** [http://www.uniprot.org/uniprot/P32347 P32347]
 +
** [http://www.uniprot.org/uniprot/P32920 P32920]
 +
** [http://www.uniprot.org/uniprot/P54224 P54224]
 +
** [http://www.uniprot.org/uniprot/O81220 O81220]
 +
** [http://www.uniprot.org/uniprot/P70697 P70697]
 +
{{#set: common-name=uroporphyrinogen decarboxylase}}
 +
{{#set: ec-number=ec-4.1.1.37}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
 
{{#set: nb gene associated=6}}
 
{{#set: nb gene associated=6}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=7}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
+
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:38, 17 March 2021

Reaction UROGENDECARBOX-RXN

  • common-name:
    • uroporphyrinogen decarboxylase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7766, heme b biosynthesis IV (Gram-positive bacteria):
    • 1 reactions found over 5 reactions in the full pathway
  • HEMESYN2-PWY, heme b biosynthesis II (oxygen-independent):
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
    • 4 reactions found over 9 reactions in the full pathway
  • PWY-5531, 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic):
    • 3 reactions found over 9 reactions in the full pathway
  • PWY0-1415, superpathway of heme b biosynthesis from uroporphyrinogen-III:
    • 5 reactions found over n.a reactions in the full pathway
  • HEME-BIOSYNTHESIS-II, heme b biosynthesis I (aerobic):
    • 4 reactions found over 4 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
    • 5 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//esubgem/index.php?title=UROGENDECARBOX-RXN&oldid=51071"