Difference between revisions of "4.2.1.59-RXN"

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(Created page with "Category:reaction == Reaction RXN-9516 == * common-name: ** 3-oxo-hexanoyl-[acyl-carrier protein] synthase ** β-ketohexanoyl-[acp] synthase ** 3-oxoacyl-[acyl-carrier...")
 
(Created page with "Category:reaction == Reaction 4.2.1.59-RXN == * common-name: ** (3r)-3-hydroxyoctanoyl-[acyl-carrier protein] dehydratase * ec-number: ** [http://enzyme.expasy.org/EC/2.3....")
 
(3 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9516 ==
+
== Reaction 4.2.1.59-RXN ==
 
* common-name:
 
* common-name:
−
** 3-oxo-hexanoyl-[acyl-carrier protein] synthase
+
** (3r)-3-hydroxyoctanoyl-[acyl-carrier protein] dehydratase
−
** β-ketohexanoyl-[acp] synthase
 
−
** 3-oxoacyl-[acyl-carrier-protein] synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
−
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
+
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Butanoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-hexanoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[3-Hydroxy-octanoyl-ACPs]][c] '''=>''' 1 [[2-Octenoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[E_subulatus_15038]]
−
* Gene: [[E_subulatus_13004]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_08948]]
+
* Gene: [[E_subulatus_15037]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[E_subulatus_18602]]
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[E_subulatus_22265]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_22266]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_13005]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[E_subulatus_13006]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
* [[PWY-5971]], palmitate biosynthesis (type II fatty acid synthase):
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''30''' reactions found over '''31''' reactions in the full pathway
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-5994]], palmitate biosynthesis (type I fatty acid synthase):
 
** '''30''' reactions found over '''31''' reactions in the full pathway
 
** '''30''' reactions found over '''31''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: common-name=3-oxo-hexanoyl-[acyl-carrier protein] synthase|3-oxoacyl-[acyl-carrier-protein] synthase|&beta;-ketohexanoyl-[acp] synthase}}
+
* LIGAND-RXN:
−
{{#set: ec-number=ec-2.3.1.179|ec-2.3.1.41}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R04537 R04537]
 +
* METANETX-RXN : MNXR94888
 +
{{#set: common-name=(3r)-3-hydroxyoctanoyl-[acyl-carrier protein] dehydratase}}
 +
{{#set: ec-number=ec-4.2.1.59|ec-2.3.1.85|ec-2.3.1.86}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=2}}
 
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
+
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:39, 17 March 2021

Reaction 4.2.1.59-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5971, palmitate biosynthesis (type II fatty acid synthase):
    • 30 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis (type I fatty acid synthase):
    • 30 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

  • LIGAND-RXN:
  • METANETX-RXN : MNXR94888

Property "Common-name" (as page type) with input value "(3r)-3-hydroxyoctanoyl-[acyl-carrier protein] dehydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.





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