Difference between revisions of "RXN-12399"

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(Created page with "Category:reaction == Reaction PROLINE--TRNA-LIGASE-RXN == * common-name: ** proline—trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/6.1.1.15 ec-6.1.1.15] *...")
(Created page with "Category:reaction == Reaction RXN-12399 == * common-name: ** xyloglucan xlxg oligosaccharide β-galactosidase ** beta-galactosidase ** xlxg xyloglucan oligosaccharide...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PROLINE--TRNA-LIGASE-RXN ==
+
== Reaction RXN-12399 ==
 
* common-name:
 
* common-name:
−
** proline—trna ligase
+
** xyloglucan xlxg oligosaccharide β-galactosidase
 +
** beta-galactosidase
 +
** xlxg xyloglucan oligosaccharide β-galactosidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.15 ec-6.1.1.15]
+
** [http://enzyme.expasy.org/EC/3.2.1.23 ec-3.2.1.23]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[PRO]][c] '''+''' 1 [[PRO-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-PRO-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[CPD-13377]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-13375]][c] '''+''' 1 [[D-galactopyranose]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_12906]]
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* Gene: [[E_subulatus_07881]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_00876]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_18607]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_12908]]
+
* Gene: [[E_subulatus_00877]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_14852]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_12907]]
+
* Gene: [[E_subulatus_14853]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* [[PWY-6807]], xyloglucan degradation II (exoglucanase):
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''3''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* DB : UNIPROT
+
* METANETX-RXN : MNXR117527
−
* ID : O51363
+
{{#set: common-name=xlxg xyloglucan oligosaccharide β-galactosidase|xyloglucan xlxg oligosaccharide β-galactosidase|beta-galactosidase}}
−
{{#set: common-name=proline—trna ligase}}
+
{{#set: ec-number=ec-3.2.1.23}}
−
{{#set: ec-number=ec-6.1.1.15}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=6}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}

Latest revision as of 19:39, 17 March 2021

Reaction RXN-12399

  • common-name:
    • xyloglucan xlxg oligosaccharide β-galactosidase
    • beta-galactosidase
    • xlxg xyloglucan oligosaccharide β-galactosidase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6807, xyloglucan degradation II (exoglucanase):
    • 3 reactions found over 8 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR117527





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