Difference between revisions of "RXN-14177"

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(Created page with "Category:reaction == Reaction 2OXOGLUTDECARB-RXN == * common-name: ** 2-oxoglutarate decarboxylase ** oxoglutarate dehydrogenase (succinyl-transferring) * ec-number: ** [h...")
(Created page with "Category:reaction == Reaction RXN-14177 == * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.163 ec-2.1.1.163] * direction: ** left-to-right == Reaction formula == * 1 ...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2OXOGLUTDECARB-RXN ==
+
== Reaction RXN-14177 ==
−
* common-name:
 
−
** 2-oxoglutarate decarboxylase
 
−
** oxoglutarate dehydrogenase (succinyl-transferring)
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.2.4.2 ec-1.2.4.2]
+
** [http://enzyme.expasy.org/EC/2.1.1.163 ec-2.1.1.163]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* synonymous:
 
−
** 2-oxoglutarate decarboxylation
 
−
** oxoglutarate decarboxylase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[Oxo-glutarate-dehydrogenase-lipoyl]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[Oxo-glutarate-dehydro-suc-DH-lipoyl]][c]
+
* 1 [[CPD-15152]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[CPD-15153]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_21822]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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** Category: [[annotation]]
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* Gene: [[E_subulatus_01575]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
** Category: [[orthology]]
−
* Gene: [[E_subulatus_23122]]
+
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
** Category: [[annotation]]
+
* Gene: [[E_subulatus_11331]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
** Category: [[orthology]]
−
* Gene: [[E_subulatus_23120]]
+
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
** Category: [[annotation]]
+
* Gene: [[E_subulatus_02327]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
** Category: [[orthology]]
−
* Gene: [[E_subulatus_23121]]
+
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
** Category: [[annotation]]
+
* Gene: [[E_subulatus_13813]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_07047]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_09794]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_07746]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_24424]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_10393]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_11575]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_17131]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_01227]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_07208]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY66-398]], TCA cycle III (animals):
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-5084]], 2-oxoglutarate decarboxylation to succinyl-CoA:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR115229
+
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04990 R04990]
 +
* METANETX-RXN : MNXR105158
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12189 12189]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26465 26465]
−
* UNIPROT:
+
{{#set: ec-number=ec-2.1.1.163}}
−
** [http://www.uniprot.org/uniprot/P23129 P23129]
 
−
** [http://www.uniprot.org/uniprot/Q02218 Q02218]
 
−
** [http://www.uniprot.org/uniprot/Q60597 Q60597]
 
−
** [http://www.uniprot.org/uniprot/Q9JRJ8 Q9JRJ8]
 
−
** [http://www.uniprot.org/uniprot/P20967 P20967]
 
−
** [http://www.uniprot.org/uniprot/P0AFG3 P0AFG3]
 
−
** [http://www.uniprot.org/uniprot/P20707 P20707]
 
−
** [http://www.uniprot.org/uniprot/P51056 P51056]
 
−
** [http://www.uniprot.org/uniprot/Q56600 Q56600]
 
−
** [http://www.uniprot.org/uniprot/O49541 O49541]
 
−
** [http://www.uniprot.org/uniprot/Q59106 Q59106]
 
−
** [http://www.uniprot.org/uniprot/Q9M2T8 Q9M2T8]
 
−
** [http://www.uniprot.org/uniprot/Q9ZRQ2 Q9ZRQ2]
 
−
{{#set: common-name=2-oxoglutarate decarboxylase|oxoglutarate dehydrogenase (succinyl-transferring)}}
 
−
{{#set: ec-number=ec-1.2.4.2}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: synonymous=oxoglutarate decarboxylase|2-oxoglutarate decarboxylation}}
+
{{#set: nb gene associated=13}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=2}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem}}

Latest revision as of 19:39, 17 March 2021

Reaction RXN-14177

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • LIGAND-RXN:
  • METANETX-RXN : MNXR105158
  • RHEA:





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