Difference between revisions of "RXN-5109"

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(Created page with "Category:reaction == Reaction RETINOL-DEHYDROGENASE-RXN == * common-name: ** all-trans-retinol dehydrogenase (nad) ** all-trans-retinol dehydrogenase * ec-number: ** [http...")
 
(Created page with "Category:reaction == Reaction RXN-5109 == * common-name: ** (e)-beta-ocimene synthase * ec-number: ** [http://enzyme.expasy.org/EC/4.2.3.106 ec-4.2.3.106] * direction: **...")
 
(3 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RETINOL-DEHYDROGENASE-RXN ==
+
== Reaction RXN-5109 ==
 
* common-name:
 
* common-name:
−
** all-trans-retinol dehydrogenase (nad)
+
** (e)-beta-ocimene synthase
−
** all-trans-retinol dehydrogenase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.105 ec-1.1.1.105]
+
** [http://enzyme.expasy.org/EC/4.2.3.106 ec-4.2.3.106]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
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* synonymous:
 
−
** all-trans retinol dehydrogenase
 
−
** retinal reductase
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[CPD-13524]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[RETINAL]][c]
+
* 1 [[GERANYL-PP]][c] '''=>''' 1 [[CPD-4889]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[E_subulatus_21402]]
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* Gene: [[E_subulatus_01092]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_20113]]
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* Gene: [[E_subulatus_01093]]
−
** Category: [[orthology]]
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** Category: [[annotation]]
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_01091]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_24029]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-3041]], monoterpene biosynthesis:
 +
** '''2''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* DB : RHEA
+
* RHEA:
−
* ID : 21284
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32692 32692]
−
{{#set: common-name=all-trans-retinol dehydrogenase|all-trans-retinol dehydrogenase (nad)}}
+
{{#set: common-name=(e)-beta-ocimene synthase}}
−
{{#set: ec-number=ec-1.1.1.105}}
+
{{#set: ec-number=ec-4.2.3.106}}
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: synonymous=all-trans retinol dehydrogenase|retinal reductase}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
+
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:39, 17 March 2021

Reaction RXN-5109

  • common-name:
    • (e)-beta-ocimene synthase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-3041, monoterpene biosynthesis:
    • 2 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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