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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction GPPSYN-RXN == | + | == Reaction RXN-14396 == |
| − | * common-name:
| |
| − | ** geranyl diphosphate synthase
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| − | ** prenyltransferase
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| − | * ec-number:
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| − | ** [http://enzyme.expasy.org/EC/2.5.1.1 ec-2.5.1.1]
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| | * direction: | | * direction: |
| | ** left-to-right | | ** left-to-right |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[CPD-4211]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''=>''' 1 [[GERANYL-PP]][c] '''+''' 1 [[PPI]][c] | + | * 1 [[HYDROXYMETHYLBILANE]][c] '''=>''' 1 [[CPD-11444]][c] '''+''' 1 [[WATER]][c] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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| − | * Gene: [[E_subulatus_01546]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[E_subulatus_24160]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[E_subulatus_13199]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[E_subulatus_22337]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[E_subulatus_22336]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[E_subulatus_01543]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[E_subulatus_01208]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[E_subulatus_05634]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | * Gene: [[E_subulatus_01544]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[E_subulatus_01545]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | * Gene: [[E_subulatus_21262]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | </div>
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * [[PWY-7736]], stellatic acid biosynthesis:
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| − | ** '''2''' reactions found over '''8''' reactions in the full pathway
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| − | * [[PWY-7410]], ipsdienol biosynthesis:
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| − | ** '''2''' reactions found over '''4''' reactions in the full pathway
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| − | * [[PWY-7141]], (3S)-linalool biosynthesis:
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| − | ** '''1''' reactions found over '''2''' reactions in the full pathway
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| − | * [[PWY-7709]], (3R)-linalool biosynthesis:
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| − | ** '''1''' reactions found over '''2''' reactions in the full pathway
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| − | * [[PWY-7102]], bisabolene biosynthesis (engineered):
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| − | ** '''2''' reactions found over '''6''' reactions in the full pathway
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| − | * [[PWY-6859]], all-trans-farnesol biosynthesis:
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| − | ** '''2''' reactions found over '''4''' reactions in the full pathway
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| − | * [[PWY-7182]], linalool biosynthesis I:
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| − | ** '''1''' reactions found over '''2''' reactions in the full pathway
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| − | * [[PWY-7659]], viridicatumtoxin biosynthesis:
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| − | ** '''1''' reactions found over '''9''' reactions in the full pathway
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| − | * [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis:
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| − | ** '''2''' reactions found over '''3''' reactions in the full pathway
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| − | * [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis:
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| − | ** '''2''' reactions found over '''5''' reactions in the full pathway
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| − | * [[PWY-5122]], geranyl diphosphate biosynthesis:
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| − | ** '''1''' reactions found over '''1''' reactions in the full pathway
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| − | </div>
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a | + | * category: [[manual]]; source: [[esub_adding_annot_form]]; tool: [[curation]]; comment: annotation |
| | == External links == | | == External links == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * METANETX-RXN : MNXR97512
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| − | * RHEA:
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| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22408 22408]
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| | * LIGAND-RXN: | | * LIGAND-RXN: |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R01658 R01658] | + | ** [http://www.genome.jp/dbget-bin/www_bget?R03166 R03166] |
| − | * UNIPROT: | + | * METANETX-RXN : MNXR105136 |
| − | ** [http://www.uniprot.org/uniprot/P08524 P08524]
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| − | ** [http://www.uniprot.org/uniprot/P05369 P05369]
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| − | ** [http://www.uniprot.org/uniprot/P14324 P14324]
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| − | ** [http://www.uniprot.org/uniprot/P46376 P46376]
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| − | ** [http://www.uniprot.org/uniprot/Q45220 Q45220]
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| − | ** [http://www.uniprot.org/uniprot/P49350 P49350]
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| − | ** [http://www.uniprot.org/uniprot/Q50891 Q50891]
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| − | ** [http://www.uniprot.org/uniprot/P49349 P49349]
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| − | ** [http://www.uniprot.org/uniprot/Q09152 Q09152]
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| − | ** [http://www.uniprot.org/uniprot/P49351 P49351]
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| − | ** [http://www.uniprot.org/uniprot/P49352 P49352]
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| − | ** [http://www.uniprot.org/uniprot/Q43315 Q43315]
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| − | ** [http://www.uniprot.org/uniprot/O24241 O24241]
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| − | ** [http://www.uniprot.org/uniprot/O24242 O24242]
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| − | ** [http://www.uniprot.org/uniprot/Q92334 Q92334]
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| − | ** [http://www.uniprot.org/uniprot/Q92218 Q92218]
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| − | ** [http://www.uniprot.org/uniprot/Q92235 Q92235]
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| − | ** [http://www.uniprot.org/uniprot/Q92250 Q92250]
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| − | ** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
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| − | ** [http://www.uniprot.org/uniprot/P49353 P49353]
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| − | ** [http://www.uniprot.org/uniprot/O04882 O04882]
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| − | ** [http://www.uniprot.org/uniprot/O65004 O65004]
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| − | </div>
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| − | {{#set: common-name=geranyl diphosphate synthase|prenyltransferase}}
| |
| − | {{#set: ec-number=ec-2.5.1.1}}
| |
| | {{#set: direction=left-to-right}} | | {{#set: direction=left-to-right}} |
| − | {{#set: nb gene associated=11}} | + | {{#set: nb gene associated=0}} |
| − | {{#set: nb pathway associated=11}} | + | {{#set: nb pathway associated=0}} |
| − | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=manual}} |
| − | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=curation}} |
| − | {{#set: reconstruction comment=n.a}} | + | {{#set: reconstruction comment=annotation}} |
| − | {{#set: reconstruction source=ectocarpus_subulatus}} | + | {{#set: reconstruction source=esub_adding_annot_form}} |
