Difference between revisions of "PHOSPHORIBULOKINASE-RXN"

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(Created page with "Category:reaction == Reaction RXN-9537 == * common-name: ** (3r)-3-hydroxymyristoyl-[acyl-carrier protein] dehydratase * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.8...")
(Created page with "Category:reaction == Reaction PHOSPHORIBULOKINASE-RXN == * common-name: ** phosphoribulokinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.19 ec-2.7.1.19] * directi...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9537 ==
+
== Reaction PHOSPHORIBULOKINASE-RXN ==
 
* common-name:
 
* common-name:
−
** (3r)-3-hydroxymyristoyl-[acyl-carrier protein] dehydratase
+
** phosphoribulokinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/2.7.1.19 ec-2.7.1.19]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
 
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
−
* synonymous:
 
−
** (3r)-hydroxymyristoyl-acp dehydratase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[R-3-hydroxymyristoyl-ACPs]][c] '''=>''' 1 [[Tetradec-2-enoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[RIBULOSE-5P]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[D-RIBULOSE-15-P2]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_18602]]
+
* Gene: [[E_subulatus_18112]]
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_15038]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_15037]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
−
** '''30''' reactions found over '''31''' reactions in the full pathway
+
** '''12''' reactions found over '''13''' reactions in the full pathway
−
** '''30''' reactions found over '''31''' reactions in the full pathway
+
* [[PWY-5723]], Rubisco shunt:
−
** '''30''' reactions found over '''31''' reactions in the full pathway
+
** '''9''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: common-name=(3r)-3-hydroxymyristoyl-[acyl-carrier protein] dehydratase}}
+
* METANETX-RXN : MNXR103217
−
{{#set: ec-number=ec-2.3.1.86|ec-2.3.1.85|ec-4.2.1.59}}
+
* RHEA:
−
{{#set: direction=left-to-right}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19368 19368]
−
{{#set: synonymous=(3r)-hydroxymyristoyl-acp dehydratase}}
+
* LIGAND-RXN:
−
{{#set: nb gene associated=3}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01523 R01523]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P23010 P23010]
 +
** [http://www.uniprot.org/uniprot/P0AEX5 P0AEX5]
 +
** [http://www.uniprot.org/uniprot/P19923 P19923]
 +
** [http://www.uniprot.org/uniprot/P19924 P19924]
 +
** [http://www.uniprot.org/uniprot/P23015 P23015]
 +
** [http://www.uniprot.org/uniprot/P12033 P12033]
 +
** [http://www.uniprot.org/uniprot/Q8GRU9 Q8GRU9]
 +
** [http://www.uniprot.org/uniprot/P09559 P09559]
 +
** [http://www.uniprot.org/uniprot/P25697 P25697]
 +
** [http://www.uniprot.org/uniprot/P93681 P93681]
 +
** [http://www.uniprot.org/uniprot/P19824 P19824]
 +
** [http://www.uniprot.org/uniprot/P27774 P27774]
 +
{{#set: common-name=phosphoribulokinase}}
 +
{{#set: ec-number=ec-2.7.1.19}}
 +
{{#set: direction=reversible}}
 +
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=2}}
 
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Latest revision as of 19:40, 17 March 2021

Reaction PHOSPHORIBULOKINASE-RXN

  • common-name:
    • phosphoribulokinase
  • ec-number:
  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • CALVIN-PWY, Calvin-Benson-Bassham cycle:
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-5723, Rubisco shunt:
    • 9 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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