Difference between revisions of "RXN-16165"

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(Created page with "Category:reaction == Reaction SAMDECARB-RXN == * common-name: ** s-adenosylmethionine decarboxylase * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.50 ec-4.1.1.50] * di...")
(Created page with "Category:reaction == Reaction RXN-16165 == * common-name: ** methionine-trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/6.1.1.10 ec-6.1.1.10] * direction: ** left...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SAMDECARB-RXN ==
+
== Reaction RXN-16165 ==
 
* common-name:
 
* common-name:
−
** s-adenosylmethionine decarboxylase
+
** methionine-trna ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.50 ec-4.1.1.50]
+
** [http://enzyme.expasy.org/EC/6.1.1.10 ec-6.1.1.10]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PROTON]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINAMINE]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[Initiation-tRNAmet]][c] '''+''' 1 [[MET]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[L-methionyl-tRNAfmet]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[E_subulatus_16520]]
+
* Gene: [[E_subulatus_16674]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_19988]]
+
* Gene: [[E_subulatus_23075]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[E_subulatus_23079]]
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[E_subulatus_21393]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_21395]]
+
* Gene: [[E_subulatus_21928]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_21392]]
+
* Gene: [[E_subulatus_23076]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_21397]]
+
* Gene: [[E_subulatus_23078]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_21396]]
+
* Gene: [[E_subulatus_21926]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_21391]]
+
* Gene: [[E_subulatus_21925]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[E_subulatus_23077]]
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[E_subulatus_21394]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_21927]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6834]], spermidine biosynthesis III:
+
* [[TRNA-CHARGING-PWY]], tRNA charging:
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[ARGSPECAT-PWY]], spermine biosynthesis:
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR119907
−
* METANETX-RXN : MNXR95455
+
{{#set: common-name=methionine-trna ligase}}
−
* RHEA:
+
{{#set: ec-number=ec-6.1.1.10}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15982 15982]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00178 R00178]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P82184 P82184]
 
−
** [http://www.uniprot.org/uniprot/P21182 P21182]
 
−
** [http://www.uniprot.org/uniprot/P0A7F6 P0A7F6]
 
−
** [http://www.uniprot.org/uniprot/P17707 P17707]
 
−
** [http://www.uniprot.org/uniprot/P28918 P28918]
 
−
** [http://www.uniprot.org/uniprot/P17708 P17708]
 
−
** [http://www.uniprot.org/uniprot/P50243 P50243]
 
−
** [http://www.uniprot.org/uniprot/P46255 P46255]
 
−
** [http://www.uniprot.org/uniprot/Q04694 Q04694]
 
−
** [http://www.uniprot.org/uniprot/Q42679 Q42679]
 
−
** [http://www.uniprot.org/uniprot/Q42829 Q42829]
 
−
** [http://www.uniprot.org/uniprot/P79888 P79888]
 
−
** [http://www.uniprot.org/uniprot/O04009 O04009]
 
−
** [http://www.uniprot.org/uniprot/O24575 O24575]
 
−
** [http://www.uniprot.org/uniprot/Q43820 Q43820]
 
−
** [http://www.uniprot.org/uniprot/Q39676 Q39676]
 
−
** [http://www.uniprot.org/uniprot/Q39677 Q39677]
 
−
** [http://www.uniprot.org/uniprot/O49972 O49972]
 
−
** [http://www.uniprot.org/uniprot/O65354 O65354]
 
−
** [http://www.uniprot.org/uniprot/O02655 O02655]
 
−
</div>
 
−
{{#set: common-name=s-adenosylmethionine decarboxylase}}
 
−
{{#set: ec-number=ec-4.1.1.50}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=9}}
+
{{#set: nb gene associated=10}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
+
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:40, 17 March 2021

Reaction RXN-16165

  • common-name:
    • methionine-trna ligase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR119907





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