Difference between revisions of "DNA-LIGASE-ATP-RXN"

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(Created page with "Category:reaction == Reaction MEPROPCOA-FAD-RXN == * common_name: ** isobutyryl-coa dehydrogenase * direction: ** left-to-right * ec_number: ** ec-1.3.8 == Reaction formul...")
(Created page with "Category:reaction == Reaction DNA-LIGASE-ATP-RXN == * common-name: ** dna ligase (atp) * ec-number: ** [http://enzyme.expasy.org/EC/6.5.1.7 ec-6.5.1.7] ** [http://enzyme.e...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction MEPROPCOA-FAD-RXN ==
+
== Reaction DNA-LIGASE-ATP-RXN ==
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* common_name:
+
* common-name:
−
** isobutyryl-coa dehydrogenase
+
** dna ligase (atp)
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/6.5.1.7 ec-6.5.1.7]
 +
** [http://enzyme.expasy.org/EC/6.5.1.1 ec-6.5.1.1]
 +
** [http://enzyme.expasy.org/EC/6.5.1.6 ec-6.5.1.6]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* ec_number:
 
−
** ec-1.3.8
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[FAD]][c] '''+''' 1 [[ISOBUTYRYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[FADH2]][c] '''+''' 1 [[METHACRYLYL-COA]][c]
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* 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[DNA-N]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[E_subulatus_16239]]
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** Category: [[annotation]]
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[E_subulatus_16238]]
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** Category: [[annotation]]
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[E_subulatus_02446]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_18782]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[VALDEG-PWY]], L-valine degradation I:
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[esub_adding_annot_form]]; tool: [[curation]]; comment: annotation
+
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
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* METANETX-RXN : MNXR95319
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* RHEA:
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* METANETX-RXN : MNXR115853
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31098 31098]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02661 R02661]
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** [http://www.genome.jp/dbget-bin/www_bget?R00381 R00381]
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{{#set: common_name=isobutyryl-coa dehydrogenase}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P12000 P12000]
 +
** [http://www.uniprot.org/uniprot/P18858 P18858]
 +
** [http://www.uniprot.org/uniprot/P35970 P35970]
 +
** [http://www.uniprot.org/uniprot/Q9QNG8 Q9QNG8]
 +
** [http://www.uniprot.org/uniprot/Q9PM08 Q9PM08]
 +
** [http://www.uniprot.org/uniprot/Q57635 Q57635]
 +
** [http://www.uniprot.org/uniprot/P49917 P49917]
 +
** [http://www.uniprot.org/uniprot/P49916 P49916]
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** [http://www.uniprot.org/uniprot/P37913 P37913]
 +
** [http://www.uniprot.org/uniprot/P51892 P51892]
 +
** [http://www.uniprot.org/uniprot/P16272 P16272]
 +
** [http://www.uniprot.org/uniprot/P33798 P33798]
 +
** [http://www.uniprot.org/uniprot/P00970 P00970]
 +
** [http://www.uniprot.org/uniprot/P00969 P00969]
 +
** [http://www.uniprot.org/uniprot/P04819 P04819]
 +
** [http://www.uniprot.org/uniprot/P19088 P19088]
 +
** [http://www.uniprot.org/uniprot/P07717 P07717]
 +
** [http://www.uniprot.org/uniprot/P26813 P26813]
 +
** [http://www.uniprot.org/uniprot/Q02093 Q02093]
 +
** [http://www.uniprot.org/uniprot/Q23694 Q23694]
 +
** [http://www.uniprot.org/uniprot/Q67480 Q67480]
 +
** [http://www.uniprot.org/uniprot/Q42572 Q42572]
 +
** [http://www.uniprot.org/uniprot/P20492 P20492]
 +
</div>
 +
{{#set: common-name=dna ligase (atp)}}
 +
{{#set: ec-number=ec-6.5.1.1|ec-6.5.1.7|ec-6.5.1.6}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec_number=ec-1.3.8}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb gene associated=0}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction comment=annotation}}
+
{{#set: reconstruction source=ectocarpus_subulatus}}
−
{{#set: reconstruction source=esub_adding_annot_form}}
 

Latest revision as of 19:40, 17 March 2021

Reaction DNA-LIGASE-ATP-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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