Difference between revisions of "RXN-5642"

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(Created page with "Category:reaction == Reaction DNA-LIGASE-ATP-RXN == * common-name: ** dna ligase (atp) * ec-number: ** [http://enzyme.expasy.org/EC/6.5.1.7 ec-6.5.1.7] ** [http://enzyme.e...")
(Created page with "Category:reaction == Reaction RXN-5642 == * common-name: ** phosphomethylethanolamine n-methyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.103 ec-2.1.1.1...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DNA-LIGASE-ATP-RXN ==
+
== Reaction RXN-5642 ==
 
* common-name:
 
* common-name:
−
** dna ligase (atp)
+
** phosphomethylethanolamine n-methyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.5.1.7 ec-6.5.1.7]
+
** [http://enzyme.expasy.org/EC/2.1.1.103 ec-2.1.1.103]
−
** [http://enzyme.expasy.org/EC/6.5.1.1 ec-6.5.1.1]
 
−
** [http://enzyme.expasy.org/EC/6.5.1.6 ec-6.5.1.6]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[DNA-N]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[CPD-406]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[CPD-5441]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_16239]]
+
* Gene: [[E_subulatus_03932]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_16238]]
+
* Gene: [[E_subulatus_03930]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_02446]]
+
* Gene: [[E_subulatus_03929]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_18782]]
+
* Gene: [[E_subulatus_03931]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-3385]], choline biosynthesis I:
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY4FS-4]], phosphatidylcholine biosynthesis IV:
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY4FS-2]], phosphatidylcholine biosynthesis II:
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR105385
−
* METANETX-RXN : MNXR115853
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25322 25322]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00381 R00381]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06868 R06868]
−
* UNIPROT:
+
{{#set: common-name=phosphomethylethanolamine n-methyltransferase}}
−
** [http://www.uniprot.org/uniprot/P12000 P12000]
+
{{#set: ec-number=ec-2.1.1.103}}
−
** [http://www.uniprot.org/uniprot/P18858 P18858]
 
−
** [http://www.uniprot.org/uniprot/P35970 P35970]
 
−
** [http://www.uniprot.org/uniprot/Q9QNG8 Q9QNG8]
 
−
** [http://www.uniprot.org/uniprot/Q9PM08 Q9PM08]
 
−
** [http://www.uniprot.org/uniprot/Q57635 Q57635]
 
−
** [http://www.uniprot.org/uniprot/P49917 P49917]
 
−
** [http://www.uniprot.org/uniprot/P49916 P49916]
 
−
** [http://www.uniprot.org/uniprot/P37913 P37913]
 
−
** [http://www.uniprot.org/uniprot/P51892 P51892]
 
−
** [http://www.uniprot.org/uniprot/P16272 P16272]
 
−
** [http://www.uniprot.org/uniprot/P33798 P33798]
 
−
** [http://www.uniprot.org/uniprot/P00970 P00970]
 
−
** [http://www.uniprot.org/uniprot/P00969 P00969]
 
−
** [http://www.uniprot.org/uniprot/P04819 P04819]
 
−
** [http://www.uniprot.org/uniprot/P19088 P19088]
 
−
** [http://www.uniprot.org/uniprot/P07717 P07717]
 
−
** [http://www.uniprot.org/uniprot/P26813 P26813]
 
−
** [http://www.uniprot.org/uniprot/Q02093 Q02093]
 
−
** [http://www.uniprot.org/uniprot/Q23694 Q23694]
 
−
** [http://www.uniprot.org/uniprot/Q67480 Q67480]
 
−
** [http://www.uniprot.org/uniprot/Q42572 Q42572]
 
−
** [http://www.uniprot.org/uniprot/P20492 P20492]
 
−
</div>
 
−
{{#set: common-name=dna ligase (atp)}}
 
−
{{#set: ec-number=ec-6.5.1.1|ec-6.5.1.7|ec-6.5.1.6}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
 
{{#set: nb gene associated=4}}
 
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:40, 17 March 2021

Reaction RXN-5642

  • common-name:
    • phosphomethylethanolamine n-methyltransferase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-3385, choline biosynthesis I:
    • 4 reactions found over 6 reactions in the full pathway
  • PWY4FS-4, phosphatidylcholine biosynthesis IV:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY4FS-2, phosphatidylcholine biosynthesis II:
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR105385
  • RHEA:
  • LIGAND-RXN:





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