Difference between revisions of "NADPYROPHOSPHAT-RXN"

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(Created page with "Category:reaction == Reaction RXN-9535 == * common-name: ** 3-oxoacyl-[acyl-carrier-protein] synthase ** β-ketomeristoyl-[acp] synthase * ec-number: ** [http://enzyme...")
(Created page with "Category:reaction == Reaction NADPYROPHOSPHAT-RXN == * common-name: ** nad pyrophosphatase * ec-number: ** [http://enzyme.expasy.org/EC/3.6.1.22 ec-3.6.1.22] * direction:...")
 
(One intermediate revision by the same user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9535 ==
+
== Reaction NADPYROPHOSPHAT-RXN ==
 
* common-name:
 
* common-name:
−
** 3-oxoacyl-[acyl-carrier-protein] synthase
+
** nad pyrophosphatase
−
** β-ketomeristoyl-[acp] synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
+
** [http://enzyme.expasy.org/EC/3.6.1.22 ec-3.6.1.22]
−
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* synonymous:
 
−
** β-ketoacyl acyl carrier protein synthase
 
−
** β-ketoacyl-acp synthase i
 
−
** β-ketoacyl-acyl carrier protein synthetase
 
−
** 3-oxoacyl-[acyl-carrier-protein] synthase
 
−
** β-ketoacyl-[acyl carrier protein] synthase
 
−
** condensing enzyme
 
−
** acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] c-acyltransferase (decarboxylating)
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Dodecanoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-myristoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[NICOTINAMIDE_NUCLEOTIDE]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[E_subulatus_16985]]
−
* Gene: [[E_subulatus_13005]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[E_subulatus_22265]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_15038]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_13006]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_15037]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_08948]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[E_subulatus_13004]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_22266]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5971]], palmitate biosynthesis (type II fatty acid synthase):
+
* [[PYRIDNUCSAL-PWY]], NAD salvage pathway I (PNC VI cycle):
−
** '''30''' reactions found over '''31''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7761]], NAD salvage pathway II (PNC IV cycle):
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[NAD-BIOSYNTHESIS-II]], NAD salvage pathway III (to nicotinamide riboside):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5381]], NAD salvage (plants):
 +
** '''6''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR101861
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11801 11801]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04726 R04726]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00103 R00103]
−
* METANETX-RXN : MNXR109082
+
{{#set: common-name=nad pyrophosphatase}}
−
{{#set: common-name=&beta;-ketomeristoyl-[acp] synthase|3-oxoacyl-[acyl-carrier-protein] synthase}}
+
{{#set: ec-number=ec-3.6.1.22}}
−
{{#set: ec-number=ec-2.3.1.85|ec-2.3.1.86|ec-2.3.1.179|ec-2.3.1.41}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: synonymous=&beta;-ketoacyl acyl carrier protein synthase|3-oxoacyl-[acyl-carrier-protein] synthase|&beta;-ketoacyl-acp synthase i|&beta;-ketoacyl-acyl carrier protein synthetase|&beta;-ketoacyl-[acyl carrier protein] synthase|condensing enzyme|acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] c-acyltransferase (decarboxylating)}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=8}}
+
{{#set: nb pathway associated=4}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
+
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:40, 17 March 2021

Reaction NADPYROPHOSPHAT-RXN

  • common-name:
    • nad pyrophosphatase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PYRIDNUCSAL-PWY, NAD salvage pathway I (PNC VI cycle):
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7761, NAD salvage pathway II (PNC IV cycle):
    • 3 reactions found over 5 reactions in the full pathway
  • NAD-BIOSYNTHESIS-II, NAD salvage pathway III (to nicotinamide riboside):
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5381, NAD salvage (plants):
    • 6 reactions found over 11 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR101861
  • RHEA:
  • LIGAND-RXN:





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