Difference between revisions of "TransportSeed-AMP"

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(Created page with "Category:reaction == Reaction RXN0-2161 == * common-name: ** l-serine:trnasec ligase (amp-forming) ** serine-trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/6.1.1...")
(Created page with "Category:reaction == Reaction TransportSeed-AMP == * direction: ** left-to-right == Reaction formula == * 1.0 AMP[e] '''=>''' 1.0 AMP[c] == Gene(s) associated with...")
 
(One intermediate revision by the same user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN0-2161 ==
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== Reaction TransportSeed-AMP ==
* common-name:
 
** l-serine:trnasec ligase (amp-forming)
 
** serine-trna ligase
 
* ec-number:
 
** [http://enzyme.expasy.org/EC/6.1.1.11 ec-6.1.1.11]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[tRNA-Sec]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[L-seryl-SEC-tRNAs]][c] '''+''' 1 [[PPI]][c]
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* 1.0 [[AMP]][e] '''=>''' 1.0 [[AMP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[E_subulatus_18290]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_17805]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[E_subulatus_18289]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes):
 
** '''1''' reactions found over '''4''' reactions in the full pathway
 
* [[PWY0-901]], L-selenocysteine biosynthesis I (bacteria):
 
** '''1''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from extracellular to cytosol compartment
 
== External links  ==
 
== External links  ==
* METANETX-RXN : MNXR123138
 
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42581 42581]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R08218 R08218]
 
{{#set: common-name=serine-trna ligase|l-serine:trnasec ligase (amp-forming)}}
 
{{#set: ec-number=ec-6.1.1.11}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: nb gene associated=3}}
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{{#set: nb gene associated=0}}
{{#set: nb pathway associated=2}}
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{{#set: nb pathway associated=0}}
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction category=manual}}
{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction tool=curation}}
{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
{{#set: reconstruction source=ectocarpus_subulatus}}
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{{#set: reconstruction source=import_from_medium}}

Latest revision as of 19:40, 17 March 2021

Reaction TransportSeed-AMP

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links