Difference between revisions of "RXN-12460"

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(Created page with "Category:reaction == Reaction DIAMINOPIMEPIM-RXN == * common-name: ** diaminopimelate epimerase * ec-number: ** [http://enzyme.expasy.org/EC/5.1.1.7 ec-5.1.1.7] * directio...")
(Created page with "Category:reaction == Reaction RXN-12460 == * common_name: ** l-asparaginyl-trnaasn hydrolase * direction: ** left-to-right * ec_number: ** ec-3.1.1.29 == Reaction formula...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DIAMINOPIMEPIM-RXN ==
+
== Reaction RXN-12460 ==
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* common-name:
+
* common_name:
−
** diaminopimelate epimerase
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** l-asparaginyl-trnaasn hydrolase
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/5.1.1.7 ec-5.1.1.7]
 
 
* direction:
 
* direction:
−
** reversible
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** left-to-right
 +
* ec_number:
 +
** ec-3.1.1.29
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[LL-DIAMINOPIMELATE]][c] '''<=>''' 1 [[MESO-DIAMINOPIMELATE]][c]
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* 1 [[Charged-ASN-tRNAs]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ASN]][c] '''+''' 1 [[ASN-tRNAs]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[E_subulatus_22451]]
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* Gene: [[EsuBft1433_3a]]
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** Category: [[annotation]]
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** Category: [[manual]]
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** Source: [[esub_adding_annot_form]], Tool: [[unknown-tool]], Assignment: n.a, Comment: annotation
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** Category: [[orthology]]
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* Gene: [[EsuBft1256_7a]]
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*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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** Category: [[manual]]
 +
*** Source: [[esub_adding_annot_form]], Tool: [[unknown-tool]], Assignment: n.a, Comment: annotation
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY-2941]], L-lysine biosynthesis II:
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* [[PWY490-4]], L-asparagine biosynthesis III (tRNA-dependent):
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** '''6''' reactions found over '''9''' reactions in the full pathway
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
 
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** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5097]], L-lysine biosynthesis VI:
 
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** '''7''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
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* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
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* category: [[manual]]; source: [[esub_adding_annot_form]]; tool: [[curation]]; comment: annotation
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* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
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* METANETX-RXN : MNXR97143
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* METANETX-RXN : MNXR117572
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* RHEA:
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{{#set: common_name=l-asparaginyl-trnaasn hydrolase}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15396 15396]
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{{#set: direction=left-to-right}}
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* LIGAND-RXN:
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{{#set: ec_number=ec-3.1.1.29}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02735 R02735]
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{{#set: nb gene associated=2}}
−
* UNIPROT:
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{{#set: nb pathway associated=1}}
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** [http://www.uniprot.org/uniprot/Q9PMD8 Q9PMD8]
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{{#set: reconstruction category=manual}}
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** [http://www.uniprot.org/uniprot/Q9JV69 Q9JV69]
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{{#set: reconstruction tool=curation}}
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** [http://www.uniprot.org/uniprot/P44859 P44859]
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{{#set: reconstruction comment=annotation}}
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** [http://www.uniprot.org/uniprot/Q58519 Q58519]
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{{#set: reconstruction source=esub_adding_annot_form}}
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** [http://www.uniprot.org/uniprot/P0A6K1 P0A6K1]
 
−
** [http://www.uniprot.org/uniprot/Q51564 Q51564]
 
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** [http://www.uniprot.org/uniprot/P46814 P46814]
 
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** [http://www.uniprot.org/uniprot/O05322 O05322]
 
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{{#set: common-name=diaminopimelate epimerase}}
 
−
{{#set: ec-number=ec-5.1.1.7}}
 
−
{{#set: direction=reversible}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=3}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
 

Latest revision as of 19:40, 17 March 2021

Reaction RXN-12460

  • common_name:
    • l-asparaginyl-trnaasn hydrolase
  • direction:
    • left-to-right
  • ec_number:
    • ec-3.1.1.29

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY490-4, L-asparagine biosynthesis III (tRNA-dependent):
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR117572





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