Difference between revisions of "CYSTEINE--TRNA-LIGASE-RXN"

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(Created page with "Category:reaction == Reaction RXN-9535 == * common-name: ** 3-oxoacyl-[acyl-carrier-protein] synthase ** β-ketomeristoyl-[acp] synthase * ec-number: ** [http://enzyme...")
 
(Created page with "Category:reaction == Reaction CYSTEINE--TRNA-LIGASE-RXN == * common-name: ** cysteine-trna ligase ** cysteine—trna ligase * ec-number: ** [http://enzyme.expasy.org/E...")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9535 ==
+
== Reaction CYSTEINE--TRNA-LIGASE-RXN ==
 
* common-name:
 
* common-name:
−
** 3-oxoacyl-[acyl-carrier-protein] synthase
+
** cysteine-trna ligase
−
** β-ketomeristoyl-[acp] synthase
+
** cysteine—trna ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
+
** [http://enzyme.expasy.org/EC/6.1.1.16 ec-6.1.1.16]
−
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* synonymous:
 
−
** β-ketoacyl-acp synthase i
 
−
** β-ketoacyl-acyl carrier protein synthetase
 
−
** β-ketoacyl acyl carrier protein synthase
 
−
** 3-oxoacyl-[acyl-carrier-protein] synthase
 
−
** condensing enzyme
 
−
** β-ketoacyl-[acyl carrier protein] synthase
 
−
** acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] c-acyltransferase (decarboxylating)
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Dodecanoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-myristoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CYS]][c] '''+''' 1 [[CYS-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-CYS-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[E_subulatus_08467]]
−
* Gene: [[E_subulatus_22265]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_15038]]
+
* Gene: [[E_subulatus_00957]]
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_13006]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_15037]]
+
* Gene: [[E_subulatus_05212]]
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_08948]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[E_subulatus_13004]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_22266]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_13005]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* [[TRNA-CHARGING-PWY]], tRNA charging:
−
** '''30''' reactions found over '''31''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
{{#set: common-name=&beta;-ketomeristoyl-[acp] synthase|3-oxoacyl-[acyl-carrier-protein] synthase}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: ec-number=ec-2.3.1.179|ec-2.3.1.86|ec-2.3.1.85|ec-2.3.1.41}}
+
* METANETX-RXN : MNXR115795
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17774 17774]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03650 R03650]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9PPB8 Q9PPB8]
 +
** [http://www.uniprot.org/uniprot/Q06752 Q06752]
 +
** [http://www.uniprot.org/uniprot/P43816 P43816]
 +
** [http://www.uniprot.org/uniprot/O29836 O29836]
 +
** [http://www.uniprot.org/uniprot/Q9CEJ0 Q9CEJ0]
 +
** [http://www.uniprot.org/uniprot/O58370 O58370]
 +
** [http://www.uniprot.org/uniprot/O83129 O83129]
 +
** [http://www.uniprot.org/uniprot/Q9ZE62 Q9ZE62]
 +
** [http://www.uniprot.org/uniprot/Q9ZKW6 Q9ZKW6]
 +
** [http://www.uniprot.org/uniprot/Q9WZH8 Q9WZH8]
 +
** [http://www.uniprot.org/uniprot/P41259 P41259]
 +
** [http://www.uniprot.org/uniprot/O51545 O51545]
 +
** [http://www.uniprot.org/uniprot/Q9Z6X4 Q9Z6X4]
 +
** [http://www.uniprot.org/uniprot/O67163 O67163]
 +
** [http://www.uniprot.org/uniprot/Q9JWJ3 Q9JWJ3]
 +
** [http://www.uniprot.org/uniprot/P47495 P47495]
 +
** [http://www.uniprot.org/uniprot/P75423 P75423]
 +
** [http://www.uniprot.org/uniprot/P74330 P74330]
 +
** [http://www.uniprot.org/uniprot/Q9UWP2 Q9UWP2]
 +
** [http://www.uniprot.org/uniprot/P21888 P21888]
 +
</div>
 +
{{#set: common-name=cysteine-trna ligase|cysteine&mdash;trna ligase}}
 +
{{#set: ec-number=ec-6.1.1.16}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: synonymous=&beta;-ketoacyl-acyl carrier protein synthetase|&beta;-ketoacyl acyl carrier protein synthase|3-oxoacyl-[acyl-carrier-protein] synthase|&beta;-ketoacyl-acp synthase i|condensing enzyme|&beta;-ketoacyl-[acyl carrier protein] synthase|acyl-[acyl-carrier-protein]:malonyl-[acyl-carrier-protein] c-acyltransferase (decarboxylating)}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb gene associated=8}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
+
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:40, 17 March 2021

Reaction CYSTEINE--TRNA-LIGASE-RXN

  • common-name:
    • cysteine-trna ligase
    • cysteine—trna ligase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





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