Difference between revisions of "GCVT-RXN"

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(Created page with "Category:reaction == Reaction ASPARAGHYD-RXN == * common-name: ** asparaginase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.1.38 ec-3.5.1.38] ** [http://enzyme.expasy....")
(Created page with "Category:reaction == Reaction GCVT-RXN == * common-name: ** aminomethyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.1.2.10 ec-2.1.2.10] * direction: ** rever...")
 
(One intermediate revision by the same user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ASPARAGHYD-RXN ==
+
== Reaction GCVT-RXN ==
 
* common-name:
 
* common-name:
−
** asparaginase
+
** aminomethyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.1.38 ec-3.5.1.38]
+
** [http://enzyme.expasy.org/EC/2.1.2.10 ec-2.1.2.10]
−
** [http://enzyme.expasy.org/EC/3.5.1.1 ec-3.5.1.1]
 
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ASN]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[L-ASPARTATE]][c]
+
* 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[THF-GLU-N]][c] '''<=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[DIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_13046]]
+
* Gene: [[E_subulatus_02309]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_13045]]
+
* Gene: [[E_subulatus_02306]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_13047]]
+
* Gene: [[E_subulatus_02307]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_13048]]
+
* Gene: [[E_subulatus_02310]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_02308]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[ASPARAGINE-DEG1-PWY-1]], L-asparagine degradation III (mammalian):
+
* [[GLYCLEAV-PWY]], glycine cleavage:
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[ASPASN-PWY]], superpathway of L-aspartate and L-asparagine biosynthesis:
 
−
** '''4''' reactions found over '''2''' reactions in the full pathway
 
−
* [[ASPARAGINE-DEG1-PWY]], L-asparagine degradation I:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* METANETX-RXN : MNXR96056
+
* METANETX-RXN : MNXR115909
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04125 R04125]
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21017 21017]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16945 16945]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00485 R00485]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P06608 P06608]
+
** [http://www.uniprot.org/uniprot/P25285 P25285]
−
** [http://www.uniprot.org/uniprot/P26900 P26900]
+
** [http://www.uniprot.org/uniprot/P28337 P28337]
−
** [http://www.uniprot.org/uniprot/P43843 P43843]
+
** [http://www.uniprot.org/uniprot/P27248 P27248]
−
** [http://www.uniprot.org/uniprot/Q9V262 Q9V262]
+
** [http://www.uniprot.org/uniprot/Q9UZP8 Q9UZP8]
−
** [http://www.uniprot.org/uniprot/Q9JT73 Q9JT73]
+
** [http://www.uniprot.org/uniprot/Q9JVP2 Q9JVP2]
−
** [http://www.uniprot.org/uniprot/O25424 O25424]
+
** [http://www.uniprot.org/uniprot/P48728 P48728]
−
** [http://www.uniprot.org/uniprot/P37595 P37595]
+
** [http://www.uniprot.org/uniprot/P49364 P49364]
−
** [http://www.uniprot.org/uniprot/Q9ZLB9 Q9ZLB9]
+
** [http://www.uniprot.org/uniprot/P49095 P49095]
−
** [http://www.uniprot.org/uniprot/O34482 O34482]
+
** [http://www.uniprot.org/uniprot/P49363 P49363]
−
** [http://www.uniprot.org/uniprot/Q9V2K1 Q9V2K1]
+
** [http://www.uniprot.org/uniprot/P54260 P54260]
−
** [http://www.uniprot.org/uniprot/O57797 O57797]
+
** [http://www.uniprot.org/uniprot/P49361 P49361]
−
** [http://www.uniprot.org/uniprot/Q9PJ82 Q9PJ82]
+
** [http://www.uniprot.org/uniprot/P49362 P49362]
−
** [http://www.uniprot.org/uniprot/P30363 P30363]
+
** [http://www.uniprot.org/uniprot/O49954 O49954]
−
** [http://www.uniprot.org/uniprot/P30362 P30362]
+
** [http://www.uniprot.org/uniprot/P93256 P93256]
−
** [http://www.uniprot.org/uniprot/P30364 P30364]
+
** [http://www.uniprot.org/uniprot/O32955 O32955]
−
** [http://www.uniprot.org/uniprot/P38986 P38986]
 
−
** [http://www.uniprot.org/uniprot/P50287 P50287]
 
−
** [http://www.uniprot.org/uniprot/P11163 P11163]
 
−
** [http://www.uniprot.org/uniprot/P50286 P50286]
 
−
** [http://www.uniprot.org/uniprot/P87015 P87015]
 
−
** [http://www.uniprot.org/uniprot/Q9UTS7 Q9UTS7]
 
−
** [http://www.uniprot.org/uniprot/P00805 P00805]
 
−
** [http://www.uniprot.org/uniprot/P0A962 P0A962]
 
 
</div>
 
</div>
−
{{#set: common-name=asparaginase}}
+
{{#set: common-name=aminomethyltransferase}}
−
{{#set: ec-number=ec-3.5.1.1|ec-3.5.1.38}}
+
{{#set: ec-number=ec-2.1.2.10}}
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:40, 17 March 2021

Reaction GCVT-RXN

  • common-name:
    • aminomethyltransferase
  • ec-number:
  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLYCLEAV-PWY, glycine cleavage:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//esubgem/index.php?title=GCVT-RXN&oldid=51991"