Difference between revisions of "H2PTERIDINEPYROPHOSPHOKIN-RXN"

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(Created page with "Category:reaction == Reaction RXN-2425 == * common-name: ** 2,3-dehydroadipyl-coa hydratase * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.17 ec-4.2.1.17] * direction:...")
(Created page with "Category:reaction == Reaction H2PTERIDINEPYROPHOSPHOKIN-RXN == * common-name: ** 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase * ec-number: ** [http://...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-2425 ==
+
== Reaction H2PTERIDINEPYROPHOSPHOKIN-RXN ==
 
* common-name:
 
* common-name:
−
** 2,3-dehydroadipyl-coa hydratase
+
** 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.17 ec-4.2.1.17]
+
** [http://enzyme.expasy.org/EC/2.7.6.3 ec-2.7.6.3]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3-HYDROXYADIPYL-COA]][c] '''<=>''' 1 [[TRANS-23-DEHYDROADIPYL-COA]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[AMINO-OH-HYDROXYMETHYL-DIHYDROPTERIDINE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[DIHYDROPTERIN-CH2OH-PP]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[E_subulatus_05198]]
−
* Gene: [[E_subulatus_20648]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_04056]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_13805]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[E_subulatus_19620]]
+
* Gene: [[E_subulatus_05199]]
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_19349]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_20644]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_02116]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[E_subulatus_13806]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_19350]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_19622]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_20645]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_20647]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_04057]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_13807]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_20646]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[E_subulatus_19621]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-321]], phenylacetate degradation I (aerobic):
+
* [[PWY-7853]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis V (Pyrococcus):
−
** '''2''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-1361]], benzoyl-CoA degradation I (aerobic):
+
* [[PWY-6797]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (Methanocaldococcus):
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7539]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia):
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7852]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis IV (Plasmodium):
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6147]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR143598
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR100694
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34863 34863]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11413 11413]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R06942 R06942]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03503 R03503]
−
{{#set: common-name=2,3-dehydroadipyl-coa hydratase}}
+
* UNIPROT:
−
{{#set: ec-number=ec-4.2.1.17}}
+
** [http://www.uniprot.org/uniprot/P22291 P22291]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/P26281 P26281]
−
{{#set: nb gene associated=16}}
+
** [http://www.uniprot.org/uniprot/O84619 O84619]
−
{{#set: nb pathway associated=2}}
+
** [http://www.uniprot.org/uniprot/Q9ZM35 Q9ZM35]
 +
** [http://www.uniprot.org/uniprot/Q9RXY4 Q9RXY4]
 +
** [http://www.uniprot.org/uniprot/O66550 O66550]
 +
** [http://www.uniprot.org/uniprot/O25680 O25680]
 +
** [http://www.uniprot.org/uniprot/Q9PJ54 Q9PJ54]
 +
** [http://www.uniprot.org/uniprot/Q9JV81 Q9JV81]
 +
** [http://www.uniprot.org/uniprot/P64143 P64143]
 +
** [http://www.uniprot.org/uniprot/Q9Z7E8 Q9Z7E8]
 +
** [http://www.uniprot.org/uniprot/P82602 P82602]
 +
** [http://www.uniprot.org/uniprot/P29252 P29252]
 +
** [http://www.uniprot.org/uniprot/P72736 P72736]
 +
** [http://www.uniprot.org/uniprot/O04862 O04862]
 +
** [http://www.uniprot.org/uniprot/Q9SZV3 Q9SZV3]
 +
** [http://www.uniprot.org/uniprot/Q9X8I1 Q9X8I1]
 +
</div>
 +
{{#set: common-name=2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase}}
 +
{{#set: ec-number=ec-2.7.6.3}}
 +
{{#set: direction=left-to-right}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=5}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
 
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Latest revision as of 19:40, 17 March 2021

Reaction H2PTERIDINEPYROPHOSPHOKIN-RXN

  • common-name:
    • 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7853, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis V (Pyrococcus):
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-6797, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (Methanocaldococcus):
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-7539, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia):
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7852, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis IV (Plasmodium):
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6147, 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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