Difference between revisions of "THI-P-SYN-RXN"

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(Created page with "Category:reaction == Reaction RXN-9655 == * common-name: ** 3-hydroxydecanoyl-[acp] dehydrase * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86] ** [http:/...")
(Created page with "Category:reaction == Reaction THI-P-SYN-RXN == * common-name: ** thiamine-phosphate diphosphorylase * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.3 ec-2.5.1.3] * dire...")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9655 ==
+
== Reaction THI-P-SYN-RXN ==
 
* common-name:
 
* common-name:
−
** 3-hydroxydecanoyl-[acp] dehydrase
+
** thiamine-phosphate diphosphorylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/2.5.1.3 ec-2.5.1.3]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* synonymous:
 
−
** hddase
 
−
** β-hydroxyacyl-acp dehydrase
 
−
** faba
 
−
** d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase
 
−
** β-hydroxyacyl-acyl carrier protein dehydratase
 
−
** β-hydroxydecanoyl thiol ester dehydrase
 
−
** (3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
 
−
** β-hydroxydecanoate dehydrase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Beta-hydroxydecanoyl-ACPs]][c] '''=>''' 1 [[Trans-D2-decenoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THZ-P]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[THIAMINE-P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_18602]]
+
* Gene: [[E_subulatus_05009]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_15038]]
+
* Gene: [[E_subulatus_05008]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_15037]]
+
* Gene: [[E_subulatus_05007]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[E_subulatus_23517]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5971]], palmitate biosynthesis (type II fatty acid synthase):
+
* [[PWY-6908]], thiamine diphosphate biosynthesis IV (eukaryotes):
−
** '''30''' reactions found over '''31''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-5994]], palmitate biosynthesis (type I fatty acid synthase):
+
* [[PWY-7356]], thiamine diphosphate salvage IV (yeast):
−
** '''30''' reactions found over '''31''' reactions in the full pathway
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY0-862]], (5Z)-dodecenoate biosynthesis I:
+
* [[PWY-6897]], thiamine diphosphate salvage II:
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7357]], thiamine phosphate formation from pyrithiamine and oxythiamine (yeast):
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR122928
+
* METANETX-RXN : MNXR104908
−
{{#set: common-name=3-hydroxydecanoyl-[acp] dehydrase}}
+
* RHEA:
−
{{#set: ec-number=ec-4.2.1.59|ec-2.3.1.85|ec-2.3.1.86}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22329 22329]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03223 R03223]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P41835 P41835]
 +
** [http://www.uniprot.org/uniprot/P71350 P71350]
 +
** [http://www.uniprot.org/uniprot/O25514 O25514]
 +
** [http://www.uniprot.org/uniprot/Q9PNL3 Q9PNL3]
 +
** [http://www.uniprot.org/uniprot/Q9JWI2 Q9JWI2]
 +
** [http://www.uniprot.org/uniprot/Q9ZL01 Q9ZL01]
 +
** [http://www.uniprot.org/uniprot/P30137 P30137]
 +
** [http://www.uniprot.org/uniprot/P39594 P39594]
 +
** [http://www.uniprot.org/uniprot/P40386 P40386]
 +
** [http://www.uniprot.org/uniprot/P72965 P72965]
 +
** [http://www.uniprot.org/uniprot/O48881 O48881]
 +
** [http://www.uniprot.org/uniprot/O34294 O34294]
 +
** [http://www.uniprot.org/uniprot/Q9ZBL5 Q9ZBL5]
 +
{{#set: common-name=thiamine-phosphate diphosphorylase}}
 +
{{#set: ec-number=ec-2.5.1.3}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: synonymous=faba|d-3-hydroxydecanoyl-[acyl-carrier protein] dehydratase|β-hydroxyacyl-acyl carrier protein dehydratase|β-hydroxydecanoyl thiol ester dehydrase|(3r)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase|β-hydroxydecanoate dehydrase|β-hydroxyacyl-acp dehydrase|hddase}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb pathway associated=4}}
−
{{#set: nb pathway associated=3}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}

Latest revision as of 19:40, 17 March 2021

Reaction THI-P-SYN-RXN

  • common-name:
    • thiamine-phosphate diphosphorylase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6908, thiamine diphosphate biosynthesis IV (eukaryotes):
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7356, thiamine diphosphate salvage IV (yeast):
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-6897, thiamine diphosphate salvage II:
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7357, thiamine phosphate formation from pyrithiamine and oxythiamine (yeast):
    • 2 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//esubgem/index.php?title=THI-P-SYN-RXN&oldid=52013"