Difference between revisions of "DNA-LIGASE-NAD+-RXN"
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(Created page with "Category:reaction == Reaction RXN-1121 == * ec-number: ** [http://enzyme.expasy.org/EC/1.14.14 ec-1.14.14] * direction: ** left-to-right == Reaction formula == * 1 FERUL...") |
(Created page with "Category:reaction == Reaction DNA-LIGASE-NAD+-RXN == * common-name: ** dna ligase (nad+) * ec-number: ** [http://enzyme.expasy.org/EC/6.5.1.6 ec-6.5.1.6] ** [http://enzyme...") |
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(2 intermediate revisions by one other user not shown) | |||
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction DNA-LIGASE-NAD+-RXN == |
+ | * common-name: | ||
+ | ** dna ligase (nad+) | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/1. | + | ** [http://enzyme.expasy.org/EC/6.5.1.6 ec-6.5.1.6] |
+ | ** [http://enzyme.expasy.org/EC/6.5.1.2 ec-6.5.1.2] | ||
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[DNA-N]][c] '''+''' 1 [[NICOTINAMIDE_NUCLEOTIDE]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** Category: [[ | + | * Gene: [[E_subulatus_16774]] |
− | *** Source: [[ | + | ** Category: [[annotation]] |
− | * Gene: [[ | + | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
− | ** Category: [[ | + | * Gene: [[E_subulatus_23475]] |
− | *** Source: [[ | + | ** Category: [[annotation]] |
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[E_subulatus_23476]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[E_subulatus_17275]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[E_subulatus_11271]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[E_subulatus_11270]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[E_subulatus_16376]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[E_subulatus_08368]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[E_subulatus_16377]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[E_subulatus_14723]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[E_subulatus_23474]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[E_subulatus_11269]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
− | |||
− | |||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[ | + | * category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a |
== External links == | == External links == | ||
− | * | + | * METANETX-RXN : MNXR115854 |
− | * | + | * LIGAND-RXN: |
− | {{#set: ec-number=ec-1. | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00382 R00382] |
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P47496 P47496] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PHT0 Q9PHT0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CIE4 Q9CIE4] | ||
+ | ** [http://www.uniprot.org/uniprot/P43813 P43813] | ||
+ | ** [http://www.uniprot.org/uniprot/O31498 O31498] | ||
+ | ** [http://www.uniprot.org/uniprot/O25336 O25336] | ||
+ | ** [http://www.uniprot.org/uniprot/O51502 O51502] | ||
+ | ** [http://www.uniprot.org/uniprot/P15042 P15042] | ||
+ | ** [http://www.uniprot.org/uniprot/P28719 P28719] | ||
+ | ** [http://www.uniprot.org/uniprot/P49422 P49422] | ||
+ | ** [http://www.uniprot.org/uniprot/P78021 P78021] | ||
+ | ** [http://www.uniprot.org/uniprot/P72588 P72588] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49078 Q49078] | ||
+ | {{#set: common-name=dna ligase (nad+)}} | ||
+ | {{#set: ec-number=ec-6.5.1.2|ec-6.5.1.6}} | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=12}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=0}} |
− | {{#set: reconstruction category= | + | {{#set: reconstruction category=annotation}} |
− | {{#set: reconstruction tool= | + | {{#set: reconstruction tool=pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=ectocarpus_subulatus}} |
Latest revision as of 19:40, 17 March 2021
Contents
Reaction DNA-LIGASE-NAD+-RXN
- common-name:
- dna ligase (nad+)
- ec-number:
- direction:
- left-to-right
Reaction formula
- 1 3-Hydroxy-Terminated-DNAs[c] + 1 5-Phospho-terminated-DNAs[c] + 1 NAD[c] => 1 AMP[c] + 1 DNA-N[c] + 1 NICOTINAMIDE_NUCLEOTIDE[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: E_subulatus_16774
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: E_subulatus_23475
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: E_subulatus_23476
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: E_subulatus_17275
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: E_subulatus_11271
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: E_subulatus_11270
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: E_subulatus_16376
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: E_subulatus_08368
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: E_subulatus_16377
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: E_subulatus_14723
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: E_subulatus_23474
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: E_subulatus_11269
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
Pathway(s)
Reconstruction information
- category: annotation; source: ectocarpus_subulatus; tool: pathwaytools; comment: n.a
External links
- METANETX-RXN : MNXR115854
- LIGAND-RXN:
- UNIPROT: