Difference between revisions of "DNA-LIGASE-NAD+-RXN"

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(Created page with "Category:reaction == Reaction 2.8.1.6-RXN == * common-name: ** biotin synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.8.1.6 ec-2.8.1.6] * direction: ** left-to-rig...")
 
(Created page with "Category:reaction == Reaction DNA-LIGASE-NAD+-RXN == * common-name: ** dna ligase (nad+) * ec-number: ** [http://enzyme.expasy.org/EC/6.5.1.6 ec-6.5.1.6] ** [http://enzyme...")
 
(3 intermediate revisions by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2.8.1.6-RXN ==
+
== Reaction DNA-LIGASE-NAD+-RXN ==
 
* common-name:
 
* common-name:
−
** biotin synthase
+
** dna ligase (nad+)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.8.1.6 ec-2.8.1.6]
+
** [http://enzyme.expasy.org/EC/6.5.1.6 ec-6.5.1.6]
 +
** [http://enzyme.expasy.org/EC/6.5.1.2 ec-6.5.1.2]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DETHIOBIOTIN]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[Sulfurated-Sulfur-Acceptors]][c] '''=>''' 1 [[BIOTIN]][c] '''+''' 2 [[CH33ADO]][c] '''+''' 2 [[MET]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c] '''+''' 1 [[Unsulfurated-Sulfur-Acceptors]][c]
+
* 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[DNA-N]][c] '''+''' 1 [[NICOTINAMIDE_NUCLEOTIDE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_02357]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[E_subulatus_16774]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_23475]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_23476]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_17275]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_11271]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_11270]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_16376]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_08368]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_16377]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_14723]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_23474]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[E_subulatus_11269]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* DB : RHEA
+
* METANETX-RXN : MNXR115854
−
* ID : 22060
+
* LIGAND-RXN:
−
{{#set: common-name=biotin synthase}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00382 R00382]
−
{{#set: ec-number=ec-2.8.1.6}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P47496 P47496]
 +
** [http://www.uniprot.org/uniprot/Q9PHT0 Q9PHT0]
 +
** [http://www.uniprot.org/uniprot/Q9CIE4 Q9CIE4]
 +
** [http://www.uniprot.org/uniprot/P43813 P43813]
 +
** [http://www.uniprot.org/uniprot/O31498 O31498]
 +
** [http://www.uniprot.org/uniprot/O25336 O25336]
 +
** [http://www.uniprot.org/uniprot/O51502 O51502]
 +
** [http://www.uniprot.org/uniprot/P15042 P15042]
 +
** [http://www.uniprot.org/uniprot/P28719 P28719]
 +
** [http://www.uniprot.org/uniprot/P49422 P49422]
 +
** [http://www.uniprot.org/uniprot/P78021 P78021]
 +
** [http://www.uniprot.org/uniprot/P72588 P72588]
 +
** [http://www.uniprot.org/uniprot/Q49078 Q49078]
 +
{{#set: common-name=dna ligase (nad+)}}
 +
{{#set: ec-number=ec-6.5.1.2|ec-6.5.1.6}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=12}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}
 
{{#set: reconstruction source=ectocarpus_subulatus}}

Latest revision as of 19:40, 17 March 2021

Reaction DNA-LIGASE-NAD+-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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