Difference between revisions of "RXN1F-147"

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(Created page with "Category:reaction == Reaction DNA-LIGASE-NAD+-RXN == * common-name: ** dna ligase (nad+) * ec-number: ** [http://enzyme.expasy.org/EC/6.5.1.6 ec-6.5.1.6] ** [http://enzyme...")
(Created page with "Category:reaction == Reaction RXN1F-147 == * ec-number: ** [http://enzyme.expasy.org/EC/5.5.1.18 ec-5.5.1.18] * direction: ** left-to-right == Reaction formula == * 1 CP...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DNA-LIGASE-NAD+-RXN ==
+
== Reaction RXN1F-147 ==
−
* common-name:
 
−
** dna ligase (nad+)
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.5.1.6 ec-6.5.1.6]
+
** [http://enzyme.expasy.org/EC/5.5.1.18 ec-5.5.1.18]
−
** [http://enzyme.expasy.org/EC/6.5.1.2 ec-6.5.1.2]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3-Hydroxy-Terminated-DNAs]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[DNA-N]][c] '''+''' 1 [[NICOTINAMIDE_NUCLEOTIDE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CPD1F-114]][c] '''=>''' 1 [[CPD1F-115]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* Gene: [[E_subulatus_00193]]
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* Gene: [[E_subulatus_16774]]
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** Category: [[orthology]]
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** Category: [[annotation]]
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*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
* Gene: [[E_subulatus_10882]]
−
* Gene: [[E_subulatus_23475]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
* Gene: [[E_subulatus_15408]]
−
* Gene: [[E_subulatus_23476]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
* Gene: [[E_subulatus_04592]]
−
* Gene: [[E_subulatus_17275]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_11271]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_11270]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_16376]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_08368]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_16377]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_14723]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_23474]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[E_subulatus_11269]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5946]], &alpha;-carotene biosynthesis:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR115854
+
* METANETX-RXN : MNXR101029
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00382 R00382]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06963 R06963]
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* UNIPROT:
+
{{#set: ec-number=ec-5.5.1.18}}
−
** [http://www.uniprot.org/uniprot/P47496 P47496]
 
−
** [http://www.uniprot.org/uniprot/Q9PHT0 Q9PHT0]
 
−
** [http://www.uniprot.org/uniprot/Q9CIE4 Q9CIE4]
 
−
** [http://www.uniprot.org/uniprot/P43813 P43813]
 
−
** [http://www.uniprot.org/uniprot/O31498 O31498]
 
−
** [http://www.uniprot.org/uniprot/O25336 O25336]
 
−
** [http://www.uniprot.org/uniprot/O51502 O51502]
 
−
** [http://www.uniprot.org/uniprot/P15042 P15042]
 
−
** [http://www.uniprot.org/uniprot/P28719 P28719]
 
−
** [http://www.uniprot.org/uniprot/P49422 P49422]
 
−
** [http://www.uniprot.org/uniprot/P78021 P78021]
 
−
** [http://www.uniprot.org/uniprot/P72588 P72588]
 
−
** [http://www.uniprot.org/uniprot/Q49078 Q49078]
 
−
{{#set: common-name=dna ligase (nad+)}}
 
−
{{#set: ec-number=ec-6.5.1.2|ec-6.5.1.6}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=12}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=output_pantograph_a.taliana.aragem}}

Latest revision as of 19:40, 17 March 2021

Reaction RXN1F-147

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5946, α-carotene biosynthesis:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR101029
  • LIGAND-RXN:





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